Search Results for "compute" - Page 19
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Showing 646 open source projects for "compute"
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VisualRiSC
Toolbox visualizing computations of Realizable Sign Conditions.
This toolbox contains a set of Python procedures in order to compute examples associated with the computation of Realizable Sign Conditions (RiSC) due to the approach by Basu, Pollack and Roy. The RiSC approach is a way to solve and analyze systems of polynomial equations and inequalities over the real numbers in the field of real-algebraic geometry. The involved computations often consist of highly sophisticated notions, not easy to illustrate by hand. -
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Runge
Runge is an Interactive Solver for Systems of Differential Equations
...It allows you to start a solution by mouse click on a plane. It's precise. It uses Runge Rule to adjust step length to satisfy required precision on each step. It's effective. When it needs to compute derivatives (Jacobian matrix, for example) it does that analytically, i.e. without using numerical methods. It's portable. It works on Windows and Linux 32 and 64 bit and Mac OS X 64 bit. It's open. It allows you to implement and embed your own algorithms (aka "solvers"). It's easy to use. It allows to export results to MS Excel and MATLAB. ... -
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libpHtools
The pHtools C API
This library allows C programs to search and query pHtools buffer databases as well as compute the acid/base buffer properties of mixtures. -
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vonMises
Package for dealing with the von Mises periodogram
...The von Mises periodogram is a data-analysis period-search tool that models the periodic signal with the so-called von Mises function, K exp(nu cos x). The package can be used to compute the periodogram itself, as well as its detection significance levels. It can also perform some Monte Carlo simulations of the periodogram. The details of the theory are given in the following refereed paper: Baluev R.V., 2013, MNRAS, V. 431, P.1167-1179. The version 1.0 uploaded here is the same package as the one that can be downloaded along with the above paper as "Supporting information". ... -
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Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of species/reactions. Many features included (see Home Page). An easy-to-use GUI (Matlab req) is included.
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PASHA: Parallelized Short Read Assembly
One of the fastest parallel short read assemblers for large genomes.
PASHA is a parallel short read assembler for large genomes using de Bruijn graphs. Taking advantage of both shared-memory multi-core CPUs and distributed-memory compute clusters, PASHA has demonstrated its potential to perform high-quality de-novo assembly of large genomes in reasonable time with modest computing resources. Our evaluation using three small real paired-end datasets shows that PASHA is able to produce better assemblies with comparable genome coverage and mis-assembly rates compared to three leading assemblers: Velvet, ABySS and SOAPdenovo. ... -
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BriCS
SaaS for running simulation models in the cloud
The Bristol Cloud Service simulation runner is a cloud computing Software as a Service designed to enable users to quickly launch simulation code on Amazon AWS' Elastic Compute Cloud (EC2). BRiCS is written in Python using the Django framework and interacts with EC2 using the boto API. BriCS enables multiple simulation runs to be launched in parallel from a web browser. Model configuration (parameters) files are uploaded via the browser and results files are downloadable on completion. BriCS enables researchers with software simulation models to access the rapid scale out opportunities of the cloud. ... -
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finiteDiff
Program for solving the Schrödinger equation
This little set of programs compute the solutions to one and three dimensional Schrödinger equations with different potentials. Explicit, implicit and eigenvalue methods are included. The explicit and implicit method are provided in C++ whereas the matrix method is implemented as a MATLAB scipt. All these method use finite differences. -
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KB1OIQ - Fl_MoxGen
Compute Moxon Rectangle antenna dimensions
Fl_MoxGen is a program which will compute the dimensions of a Moxon Rectangle antenna when given the desired frequency and diameter of the construction material (typically wire). It also generates PDF and xnec2c outputs. Please note that this software is also distributed within the "Andy's Ham Radio Linux" software collection. -
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Cbench is intended as a relatively straightforward toolbox of tests, benchmarks, applications, utilities, and framework to hold them together with the goal to facilitate scalable testing, benchmarking, and analysis of a Linux parallel compute cluster.
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ParaSim
Parallelized calculation of molecular similarities
...As as special feature, ParaSim allows to store and and to access frequently queried datasets as persistant objects in memory for short response times. ParaSim calculates chemical similarities based on binary structural fingerprints. It does not compute fingerprints by itself but relies on third party software to do so. Basically, all types of structural fingerprints which can be stored in an array of bits (a bitset) can be used by ParaSim. See the Wiki (https://sourceforge.net/p/parasim/wiki/Documentation/) for detailed documentation. FEEDBACK HIGHLY APPRECIATED! -
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POPBAM is a tool to perform evolutionary or population-based analyses of next-generation sequencing data. POPBAM takes a BAM file as its input and can compute many widely used evolutionary genetics measures in sliding windows across a genome.
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Beat Station
beatStation is an openFrameworks tapping recorder
...beatStation was designed as a game with a purpose application in which users can compete between each other in tapping various songs. In this setup, you need to have Octave or Matlab installed in order to compute the score for each user. The source code and build instructions can be found at: https://github.com/SMC-INESC/beatStation beatStation can be used by researchers to annotate audio, conduct experiments, or as an inspiration for future apps. Contact me at miron.marius [at] gmail [dot] com for future questions -
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Comparison of Cartesian Treecodes
Fortran code to compare particle-cluster and cluster-particle treecode
In molecular simulations it is sometimes necessary to compute the electric potential at M targets due to a disjoint set of N charged source particles. Direct summation is prohibitively expensive when M and N are large. We provide Fortran 90 code for two complementary treecode methods which reduce the cost. The standard particle-cluster treecode partitions the sources into an octree and applies a far-field approximation, while a recently developed cluster-particle treecode instead partitions the targets into an octree and applies a near-field approximation. ... -
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tuda-rsync_install
install method for cluster compute nodes
Tuda-rsync_install is a initrd image containing scripts to partition and rsync a rootfs to compute, or other nodes. A fast, easy and flexible solution not only for HPC systems, although it has been developed for that purpose. -
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crosscenter
Program to compute cross center
Assisted program to compute the center of a cross in an image. It is based in python and opencv. Main target is massive data processing. Developed for my Ph.D. -
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rocsy
Routines for the ocean carbonate system
The rocsy package is designed to accurately and efficiently compute all marine carbonate system variables from dissolved inorganic carbon (DIC), total alkalinity (Alk), temperature, and salinity as well as phosphate and silica concentrations. The pH scale and thermodynamic equilibrium constants used in rocsy are those recommended by Best-Practices Guide (Dickson et al., 2007). Also included are options to use more recent formulations for K1 and K2 from Millero (2010) and for total boron from Lee et al. (2010). ... -
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mrocs
Model routines for the ocean carbonate system
The mrocs software is designed to accurately and efficiently compute all marine carbonate system variables from dissolved inorganic carbon (DIC), total alkalinity (Alk), temperature, and salinity as well as phosphate and silica concentrations. By default, the thermodynamic equilibrium constants used in mrocs are those recommended by Best-Practices Guide (Dickson et al., 2007). The mrocs package also includes options to use more recent formulations for K1 and K2 from Millero (2010) and for total boron from Lee et al. (2010). ... -
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GALATEAS
GALATEAS LangLog analyzes user queries recorded in transaction logs
The GALATEAS project offers digital content providers an innovative approach to understanding users' behaviour by analysing language-based information from transaction logs and facilitates the development of improved navigation and search technologies for multilingual content access. -
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Bowling Score
Simple Java project to compute the bowling score
A simple Java project meant to compute the score of a bowling game. Currently implemented: - src/ao.bowling: architecture for the bowling game (a Game can be played by multiple Players, each Player has 10 Frames in which to knock down the pins within 1-3 Throws) - test/ao.bowling: JUnit test cases for a few typical scenarios TODO: - parse&sanitize user input (sequence of numbers representing number of pins knocked down at each throw) - simple swing interface where user inserts data and gets the score - documentation -
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GPDC
Gravity Potential Derivatives Calculator
GPDC is a C file to compute partial derivatives of a gravity potential up to any order by means of an automatic differentiation method. -
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Sailcut CAD is a sail design and plotting software. It allows you to design and visualise your own sail and compute the accurate development of all panels in flat sheets.
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The DetStoch package offers the user two different methods to compute chemical reactions: Deterministic and Stochastic approaches. It allows the user to play with an intuitive GUI framework and compute the evolution rates of the chemical reactions with the different methods available. The results are displayed in graphical plots of the species concentration over the time. The package is designed to solve any of the following reactions by either one of the two approaches mentioned: Synthesis-Decompostion Reaction Chain Reaction Nuclear Chemical Reaction Lodka Model Brusselator Model Furthermore, the Stochastic approach can be computed by several stochastic simulation algorithms. ...
