Search Results for "compute" - Page 18
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Showing 646 open source projects for "compute"
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Arbalet
a Java tool to view and manipulate phylogenetic trees
Arbalet is a Java tool to view and manipulate phylogenetic trees and compute their Parsimony score. With Arbalet, given a file of taxa and a tree in Newick format you can: visualize a parsimony tree and the score of its nodes Scroll and zoom to examine some part of the trees Export the tree as an image (PNG, SVG, ...) Compare two trees in terms of number of operations to transform one tree to another -
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Ogljpeg
JPEG decompression accelerated on GPU using OpenGL compute shaders
Ogljpeg is JPEG decompression library. Primary focus of this project is to speed up texture upload process using JPEG compression. For this purpose OpenGL compute shaders are used and result of decompression is OpenGL texture loaded in GPU memory. -
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Network Symmetries and Synchronization
Sage scripts to analyse network symmetries
The goal of this project is to help readers understand and utilize the algorithm presented in our paper (http://arxiv.org/abs/1309.6605). These scripts use Sage to find symmetries and clusters in networks, and compute the transformation matrix to irreducible representation coordinates. I will try to update these codes to be more useful in the coming months. I welcome feedback, and will try to fix bugs and add features accordingly. Disclaimer: I make no guarantee that my code will work for your purposes, whatever they are. -
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MolSig
The Stereo Signature Molecular Descriptor
An algorithm to compute molecular graph descriptors considering the stereochemistry of the molecular structure, based on our previously introduced signature molecular descriptor. The algorithm can generate two types of descriptors, one which is compliant with the Cahn-Ingold-Prelog priority rules, and a faster one based on our previous definition of a directed acyclic graph that isaugmented to a chiral molecular graph. -
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MIST
A MATLAB toolbox to simulate optical systems
Modal Interferometer Simulation Tool (MIST) is a MATLAB toolbox that can simulate arbitrary resonant optical systems in the paraxial beam approximation. It allows the user to define any optical setup (composed typically of laser sources, mirrors, lenses, electro-optical modulators and detectors) and to compute the static laser field at any point. It uses a Hermite-Gauss modal decomposition to simulate diffraction limited optics. This tool is being developed mainly for simulation of large scale interferometers with resonant cavities used for the detection of gravitational waves. Subscribe to the mailing list for updates and news. ... -
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...It is possible to configure the duplicate search in the settings. To optimize the duplicate search, hashes are stored in a database. If a directory is inspected many a time, there is no need to compute the performance-expensive check-sum again.
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jrdistribution
Combines R console with GUI for analysis of probability distributions.
JRdistribution project is an attempt to combine a convenient GUI with the power of R language to compute probability distributions' parameters. We provide a dozen of probability distributions which you can analyze changing their parameters using both graphical interface and R console. Using the menu, any time you can get some useful output, e. g. expected value or probability density plot. You are also able to perform more complex computing being provided R console waiting for your orders.GUI and R console are connected and you can change the probability parameters in the graphical interface and then use them in your script. ... -
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JCycles
[frozen] A library for computing cycles in graphs or in Java code.
[This project is frozen, but has an offspring with more features: https://github.com/jeffhain/jadecy ] JCycles provides treatments to compute cycles, or just strongly connected components, in directed graphs in general, or in classes or packages dependencies graphs parsed from class files (major version <= 51, else does best effort). It uses Tarjan's algorithm for SCCs, and Johnson's for cycles, with continuations instead of recursion, which allows to handle large graphs (< Integer.MAX_VALUE vertices). ... -
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ThunderstormDistributor
Distribute jobs to compute nodes on dynamic clusters
ThunderstormDistributor is a queuing system that distributes jobs and computational workload across dynamic clusters in the cloud. It manages the assignment of jobs to maximize CPU and memory usage and prevent oversubscription of compute nodes. It also performs advanced statistics collection on individual compute nodes and jobs to graph the distribution of disk, network, CPU, and memory usage over time, which facilitates the advanced optimization and tuning of computational workflows. -
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etm provides an intuitive format for using plain text files to store data, a command line interface for viewing data in a variety of convenient ways and a GUI interface for both viewing and modifying data. Repetition and alerts are supported .
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FormulaEquation
An equation calculator
FormulaEquation is an equation calculator. It can compute non-standard equation. SIMPLIFIED CHINESE ONLY -
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PageRank for wikipedia
PageRank algorithm for wikipedia pages on Amazon Elastic MapReduce
• Implemented the project using PageRank algorithm for Wikipedia pages on Amazon Elastic MapReduce. • Designed MapReduce jobs for red links removal, outlink adjacency graph, compute the total number of pages, PageRank calculation, sorting of PageRanks. • To run the project on amazon Elastic MapReduce specify jar location. Pass the directory locations as an argument of input and output respectively. -
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Error Propagation Calculator
Easily propagate measurement errors through mathematical operations.
Error Propagation Calculator is essentially a cross-platform GUI front-end for the Python Uncertainties library that does not require knowledge of Python to use. Simply point and click to enter values and errors, input your expression and press compute. The program evaluates native Python code, but the user does not need to know the syntax as common operators are provided as buttons, similar to a scientific calculator. -Evaluate expressions with as much as 26 different variable and error pairs. -Copy output to the system clipboard by simply double clicking the output field. ... -
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RainforestCluster
Dynamically manage Amazon EC2 clusters
RainforestCluster is an Amazon EC2 python program that manages and load-balances dynamic clusters to allow for maximum workflow flexibility and speed at minimal cost. It enables one to quickly and cheaply create dynamic compute clusters in the cloud, which can then run computational pipelines generically. It is also able to optimize the use of spot instances - idle computers in Amazon's cloud that are available at drastically reduced cost (5x-10x cheaper) - but can be terminated at any moment if capacity drops or the bid price rises. It also provides pre-installed features such as GlusterFS distributed filesystems, ThunderstormDistributor queuing system, RAID 0 /scratch, password-less ssh, and automatic cluster management, for ease of use and maximum processing speed for computational tools. ... -
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Portfolio management GUI for fixed income securities. The program compute the present value, duration, convexity, yield to maturity of the portfolio according to the specified term structure. The term structure can be modified then the portfolio characteristic will be updated accordingly. The program need Microsoft Visual C++ 2010 Redistributable Package (http://www.microsoft.com/en-ca/download/details.aspx?
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Compute minimum variance portfolio according to prices available in csv format. The program need Microsoft Visual C++ 2010 Redistributable Package (http://www.microsoft.com/en-ca/download/details.aspx?id=5555)
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XFUNC 2.2 is a IBM PC program for DOS. It is an aid to Electronics Engineer who calculates transfer functions using symbolic algebra. It compute the frequency domain transfer function of a circuit in symbolic format, given a circuit description netlist in linear model. Calculate AC or DC symbolic transfer function in S-domain for Linear Circuits or Z-domain for Switching Circuits. Accept resistors, capacitors, inductors, dependent sources, ideal opamps, and ideal switches. ...
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IterInt is a numerical integration package that implements iterated numerical integration methods. Iterated methods can be used to compute low dimensional (less than ten, for example) integration problems to get very accurate results.
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The sequence alignment task in MAGI (magi.ucsd.edu) is based on the miRanda algorithm, but we redesign the miRanda algorithm on GPU by taking its advantages of massively parallel computing and extra high memory bandwidth using using NVIDIA’s Compute Unified Device Architecture (CUDA). The CUDA-miRanda implementation is a fast microRNA target identification algorithm that aligns short nucleotide sequences (i.e., < 32 nucleotides) against longer reference sequences (e.g., 20k nucleotides). It has the ability to report multiple alignments and the corresponding traceback sequences for any given query-reference pair with up to 166x speedup on 4 GPUs compared to regular CPUs.
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Chmuk
GPS data visualisation and exploration
A really wonderful software to visualise and analyse GPS traces in many different ways (speed and elevation variation, etc.), with different background maps (hiking map, road map, orienteering map, aerial image, cycling map, etc.). It is possible to make KML exports. -
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numerical model for circular wave tank
A two-phase flow model in cylindrical coordinate for circular tank
1.The numerical model was built based on two phase imcompressible flow model in cylindrical coordinates by using the projection method to compute the Navier-Stokes equations and VOF method to track the free surface. 2.To track the free surface with VOF method in cylindrical coordinates, CICSAM method was used. 3. This model can be used to simulate multidirectional waves and oblique waves with wave source method implemented inside the computational domain as a circle. -
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Mpaxs
Transparent Local and Remote Parallelization for Java
Mpaxs provides a simple abstraction for executing Callables and Runnables either locally within the same Virtual Machine, on the same host via RMI, or on remote machines, also via RMI. It supports launching of new compute hosts via an extensible API, currently featuring local compute host launching and grid compute host launching using the DRMAA API. -
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jStyleParser
Java CSS parser and DOM style assignment library
...It has its own application interface that is designed to allow an efficient CSS processing in Java and mapping the values to the Java data types. It is also able to apply the parsed style sheets to a DOM that represents an HTML or XML document and to compute the resulting style of the individual document elements. It supports CSS 2.1 and a large subset of CSS3. -
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Chemical Reaction
Balance chemical reaction and compute material balance
This Python program is used to balance a chemical reaction and to compute the material balance. Furthermore, it's able to check molecules and to write the condensed strutural formula from the name of an organic molecule. (Those both functionalities are still limited.) -
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CUDAPm1
CUDA implementation of P-1 factoring for Mersenne numbers
CUDAPm1 is a modification of CUDALucas that implements the P-1 factoring algorithm for Mersenne numbers using the Fast Fourier Transform implemented by nVidia's cuFFT library. You need a CUDA-capable nVidia card with compute compatibility >= 1.3.
