Search Results for "throughput" - Page 16
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Showing 502 open source projects for "throughput"
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JdonFramework
a Domain Driven Design + CQRS + EventSource java framework
...INTRODUCTION --------------------------------------------- JdonFramework is a java framework to build your Domain Driven Design + CQRS + EventSource applications with asynchronous concurrency and higher throughput. 2. GETTING STARTED ------------------ In the "example" directory there are several examples for web application. You can run runTest.bat in this directory to see how to play JdonFramework in Application. In the "doc" directory there are all documents about how to use. Source Project : https://github.com/banq/jdonframework -
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Be more efficicient in Adobe Lightroom! Paddy throughput more than 100% by mapping the sliders, presets, camera profiles, and any shortcut to unused keys, external Keyboards and MIDI controllers. Easy interface, equivalent to very expensive commercial solutions. Also supports Scripting in Lightroom, relative presets, ext
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A simple lightweight system for genomic annotation written in Java. SHAP uses the Spring application framework, Hibernate for persistence and full-text searching of results and DRMAA for Grid computing.
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TFAST
Software for analysis of afSELEX-seq data
Transcription Factor Analysis using SELEX with High-Throughput Sequencing (TFAST) is software developed by the Mobley lab at the University of Michigan designed to assist with transcription factor binding site discovery using data generated from aptamer-free SELEX-seq (afSELEX-seq). -
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...However I will be happy to answer any queries or provide support and comments if you are interested in extending this algorithm. The method is fully described in Deshpande, V., Fung, E. D., Pham, S., & Bafna, V. (2013). Cerulean: A hybrid assembly using high throughput short and long reads. arXiv preprint arXiv:1307.7933. http://arxiv.org/abs/1307.7933
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rmisockfactory
Collection of RMI Socket Factories
This project contains a collection of RMI socket factories -- for instance gzip-encoded data sent over the wire, NIO-based communication etc. -
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...See here: https://github.com/ziplet/ziplet A J2EE servlet filter which compresses data written to the response. It supports several algorithms (gzip, deflate, etc.) and emphasizes minimal memory usage and high throughput. Also provides detailed performance stats. Feel free to fork pjl-comp-filter on Github: https://github.com/ziplet/ziplet
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ParaSim
Parallelized calculation of molecular similarities
...ParaSim addresses this challenge by parallelizing the calculations according to the number of computing cores available on a single machine. It is optimized for the throughput of very large numbers of query structures against very large numbers of reference structures. As as special feature, ParaSim allows to store and and to access frequently queried datasets as persistant objects in memory for short response times. ParaSim calculates chemical similarities based on binary structural fingerprints. ... -
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Kayacc
A Compiler Development Toolkit
Kayacc is an alternate name for the TOMBO project. I am in the process of updating the Tombo project page with version 2.1.0. Please download Tombo2.1.0.tar.gz from the Files tab. Tombo is a compiler generation toolkit for constructing compilers and interpreters. It includes a BNF compiler that generates parsers for context free grammars, and a class library to support compiler development. The class library supports symbol tables, Unicode text manipulation, reserved word mappings,... -
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DAWGPAWS is a suite of command line programs written in Perl that accelerates annotation of genes and transposable elements in plant genomes by automating the process of running annotation programs and facilitating combined evidence annotation curation.
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NoCTweak
a Parameterizable Simulator for Early Exploration of Networks On-Chip
A networks-on-chip (NoC) simulator allows designers to early estimate performance (latency and throughput), energy efficiency (average/peak power, average energy per packet) and area of several networks on-chip configurations at different CMOS nodes. This tool is a cycle-accurate simulator and is open-source using SystemC, a C++ plugin, which is used to quickly model complex systems at a higher level but less details than RTL. NoCTweak was developed by Dr. -
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GenOO-HTS
A Modern Perl Framework for High Throughput Sequencing analysis
GenOO-HTS [jee-noo] is an open-source; object-oriented Perl framework specifically developed for the design of High Throughput Sequencing (HTS) analysis tools. The primary aim of GenOO-HTS is to make simple HTS analyses easy and complicated analyses possible. GenOO-HTS models biological entities into Perl objects and provides relevant attributes and methods that allow for the manipulation of high throughput sequencing data. Using GenOO-HTS as a core development module reduces the overhead and complexity of managing the data and the biological entities at hand. ... -
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MspJI-seq_pipeline1.0
an pipeline for MspJI-digesting sequencing in DNA methylation study
...Modification-dependent restriction endonuclease MspJI digestion coupled with next generation sequencing could estimate the methylation state of "CNNR" Cytosine location in the genome by mapping high throughput reads to the reference sequences. MspJI-seq_pipeline1.0 is designed to be a general-purpose mapping program to handle these special characteristics of MspJI-seq. Its alignment is based on the open source program SOAP (Short Oligo Alignment Program), and mCNNR sites recognition is performed by regular expression in perl. -
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AMBIENT
Find active modules in metabolic networks using high-throughput data
IMPORTANT: Since publication of the AMBIENT method in BMC Sys Bio, several updates have been made. If you wish to use the version used in the paper it is v0.6.3, however I recommend using the latest version which works in the same way but with additional options and has stability and performance improvements. Thanks for your interest! AMBIENT (Active Modules for Bipartite Networks) is a Python module that uses simulated annealing to find areas of a metabolic network (modules) that have... -
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throughput
A repository for replicable experiments with human-robot systems
The Throughput repository aims to provide a mechanism for sharing complete experimental papers for human-robot systems. Each experimental paper consists of 5 parts: Description (e.g. link to a journal paper), data sets, code (and/or executables), hardware identifiers, and method (e.g. experiment protocol). That is, each experimental paper is a sufficient description of an experiment that has both a robot and a human component, for the purpose of allowing replication of the experiment. -
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CrossLink-DB
high-throughput crosslinking data repository
Data repository for the high-throughput crosslinking data. Online data processing tools. -
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HypoPhen
A hypocotyl phenotyping software
This is a semi-automatic high-throughput hypocotyl phenotyping software. It takes as input time-lapsed images of hypocotyls and measures their elongation and bending -
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PortFusion
Distributed reverse / forward proxy and tunneling solution for TCP.
...A single package that makes the most of each platform by tapping into their unique capabilities, combining this power with an intuitive interface, beautiful design and Haskell's excellent support for unprecedented levels of concurrency and parallelism. It strives for the smallest source code size (< 500 lines) while delivering maximum throughput with near zero overhead. -
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MetCore
Metabolomics Bioinformatics Tools
Our bioanalytical research exploits practical and efficient high-throughput technologies for the analyses of complex mixtures derived from living systems. This will facilitate the development of preventive, predictive and personalized medicine for specific diseases and will promote health and wellness. We use a number of high-throughput analytical platforms including multidimensional liquid chromatography-mass spectrometry (MDLC-MS) for proteomics, and for metabolomics; liquid chromatography-mass spectrometry (LC-MS), and comprehensive two-dimensional gas chromatography-mass spectrometry (GCxGC/TOF-MS). ... -
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GWT Uploader
GWT library that encapsulates the browser's file upload capabilities.
...Using GWT Uploader allows for enhanced file upload dialogs (multiple uploads, drag and drop, queues, parallel streams, etc.) and interactive interfaces (upload progress indicators, real-time throughput display, etc.) within GWT applications using pure Java code that provides a consistent experience across all browsers. If the browser is capable of handling file uploads using a modern HTML5 approach, the upload is handled using pure DOM elements and Javascript events. In the case that the browser does not support the modern approach (most notably IE 9 and earlier), the GWT Uploader component instead transparently handles the uploads via the Flash-based SWFUpload library. -
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Head-Body String Matching
scalable string pattern matching with head-body partitioning
Scalable dictionary-based string pattern matching based on the head-body partitioning technique. Aims to handle very large dictionaries and achieve attack resilient multi-core scalable throughput performance. Prototype/experimental project. -
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NovelSeq
Novel sequence insertion detection
The NovelSeq pipeline is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. -
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jTrcezer
NS-2 Trace file analyzer, graph creator for wired and wireless sims
...Wired, old wireless and new wireless are already supported but jTrcezer was developed in order to be easy for users to make changes or/and add new trace formats. The final results of the analyzing process are 2D charts for throughput,load,jitter,sent-forwarded-dropped packets and endtoend delay. Also jTrcezer support two different modes for these charts, As-Is and Time Average mode. This application uses jFreechart 1.0.13 library -
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Inet traffic Meter
Internet traffic meter
...It measures the traffic on the entire network not just one computer. No documentation or help provided at this point. Just colored meter bars with the bottom one showing average throughput. It is color coded to show the congestion. This is windows only and must have .NET framework V2 installed. No installation needed. -
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Dreep
DREEP
Detecting low-level mutations by utilizing the re-sequencing error profile of the data
