Showing 646 open source projects for "compute"

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  • 1

    OpenGrowth

    OpenGrowth is a program which constructs de novo ligands for proteins.

    ...OpenGrowthGUI, FOG2.0, and the 3Mer-Screen stand-alone can be found in OpenGrowth_1.0.zip. To prepare new fragments you need BuildingFragments_1.0.1.zip and the scripts for MD simulations are in MD-Scripts_1.0.1.zip. SMoG2016.tar.gz allows to compute a score with the newly developed function (J. Chem. Inf. Mod., http://pubs.acs.org/doi/abs/10.1021/acs.jcim.6b00610). For any questions, please send emails exclusively at opengrowth-discuss@lists.sourceforge.net.
    Downloads: 5 This Week
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  • 2

    pbkdf2

    Expands passwords using pbkdf2 and scrypt

    ...Modern CPUs excel at memory bandwidth. Custom ASICs have two orders of magnitude less of an advantage over CPUs in memory bandwidth compared with the advantage they can have in compute power. Despite its name, Pbkdf2's unique ability isn't creating PBKDF2-derived passwords, it's making it easy to create Scrypt-derived passwords. All available documentation can be read online at http://pbkdf2.sourceforge.net
    Downloads: 0 This Week
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  • 3
    MIGET graphical user interface

    MIGET graphical user interface

    The multiple inert gas elimination technique (MIGET)

    The multiple inert gas elimination technique (MIGET) was developed in the 1970s to measure the pulmonary exchange of a set of six different inert gases dissolved together in saline (or dextrose) and infused intravenously. It then uses those measurements to compute the distribution of ventilation/perfusion ratios that best explains the exchange of the six gases simultaneously. MIGET is based on the very same mass-conservation principles underlying the classic work of Rahn and Fenn and of Riley and coworkers in the 1950s, which defines the relationship between the ventilation/perfusion ratio and the alveolar and capillary partial pressures of any gas. ...
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  • 4
    CCapture.js

    CCapture.js

    A library to capture canvas-based animations at a fixed framerate

    ...Unlike traditional screen recording tools, it decouples rendering speed from capture speed, allowing developers to generate smooth video outputs even when frames take longer to compute. It works by overriding time-related browser functions such as requestAnimationFrame and Date.now to simulate a stable time progression, ensuring every frame is captured accurately. This approach enables the creation of high-resolution videos, slow-motion sequences, or complex visualizations without dropped frames. The library supports multiple export formats including WebM, GIF, PNG sequences, and JPEG archives, making it flexible for different workflows. ...
    Downloads: 1 This Week
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  • 5

    IPS Framework

    A simple Python framework for loosely-coupled multiphysics simulations

    ...One of the novel features of the IPS framework is its ability to support parallelism at multiple levels: components can launch individual parallel tasks, and also launch multiple tasks concurrently. The framework can execute multiple components concurrently, and even multiple simulations, all within the same pool of compute nodes.
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  • 6
    BlockSparse

    BlockSparse

    Efficient GPU kernels for block-sparse matrix multiplication

    The blocksparse repository provides efficient GPU kernels (TensorFlow custom ops) for block-sparse matrix multiplication and convolution operations. The idea is to exploit block-level sparsity — i.e. treat matrices or weight tensors as composed of blocks, many of which may be zero or unused — to save compute and memory when sparsity patterns are structured. This is particularly useful in models like Sparse Transformers, where attention matrices or intermediate layers may adopt block-sparse patterns to scale better. The repo implements both blocksparse and blockwise convolution/transpose-convolution primitives, with support for preparing, executing, and verifying those ops on NVIDIA GPUs. ...
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  • 7

    UAV Drone

    Airborne avionics platform for drone system identification and control

    UAV Drone is a suite of software and hardware which is hosted on Raspberry Pi for the purpose of drone system identification/mathematical modelling and control law development. This platform measures critical aerospace measurements of Pitch, yaw, Roll via AHRS, location through GPS, and air data through Pitot Static system. Control of the drone is provided through user developed Control law based on critical aircraft parameters to 16 configurable PWM outputs to servos or motors...
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  • 8
    NanoSystem Class

    NanoSystem Class

    Class collection to develop new technologies (nano-t)

    NanoSystem Class is a class collection to develop new technologies (e.g. new heat exchangers). This handbook contain the method descriptions to use Knf-Model class (to compute nano uid thermal conductivity), VnfModel class (to compute nanouid viscosity) and NnfModel class (to compute nano uid Nus-selt number). NanoSystem class is free software. MD5-code: AF76BF339EDA744EA023957604E919EF
    Downloads: 0 This Week
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  • 9
    NiceHash Miner

    NiceHash Miner

    NiceHash easy to use CPU & GPU miner

    NiceHash Miner is an easy to use CPU & GPU cryptocurrency miner for Windows. With a simple an intuitive graphical user interface it allows you to quickly turn your PC, workstation or server into money-making cryptocurrency mining machine. Why leave your computer idle, whereas it could earn you Bitcoins with just a few clicks? NiceHash Miner is essentially the only tool a miner needs. No need to go through tons of configuration files, various mining software versions, configuration tuning...
    Downloads: 14 This Week
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  • 10
    This is an IQM plugin to compute the PPI index for binary digital images. This index represents the compactness of an object. PPI is computed with the FFI index and the Lacunarity using the ToW algorithm: PPI = FFI^(Ltw) For FFI, please see: https://sourceforge.net/projects/iqm-plugin-ffi/ Andronache etal. Fractal analysis for studying the evolution of forests, Chaos, Solitons & Fractals, 2016, Vol 91, 310-318.
    Downloads: 0 This Week
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  • 11
    AmberAnalysis

    AmberAnalysis

    Command-line tools for analyzing Amber Molecular Dynamics simulations.

    A suite of command-line tools for analyzing chemically relevant features of an Amber Molecular Dynamics simulation. Can detect the position of a planar interface between two substances and plot density relative to that interface for atoms of an arbitrary type, name, charge, or residue. Orientation of three-atom residues (such as water) may be calculated and plotted. Uses parallel processing to detect hydrogen bonds, and can produce a bonding profile. Output files can be displayed as graphs...
    Downloads: 0 This Week
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  • 12
    A modular and extended implementation of the optimal annual routine modelling framework by Houston and McNamara (1999) to compute optimal life-history strategies of animals in cyclic environments.
    Downloads: 0 This Week
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  • 13
    Matlab Toolbox 'Measures of Effect Size'
    A set of Matlab functions which compute effect size statistics and (exact) confidence intervals for a wide range of data analysis situations, including two-sample-, oneway-, twoway- and contrast analyses as well as categorical data in tables.
    Downloads: 0 This Week
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  • 14

    diamond

    DIAlectical MOdels eNcoDing is a collection of ASP-encodings for ADFs

    Abstract dialectical frameworks (ADFs) are a powerful generalisation of Dung's abstract argumentation frameworks. DIAMOND (DIAlectical MOdels eNcoDing) is an answerset programming based software system. It translates ADFs into answer set programs whose stable models correspond to models of the ADF with respect to several semantics (i.e. admissible, complete, stable, grounded). The target audience for this tool are argumentation researchers.
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  • 15
    Matlab Toolbox EyeX

    Matlab Toolbox EyeX

    Matlab Toolbox for Tobii EyeX Tracker

    NEWS Do you want to Eye Movement Analysis? Identify saccades and fixations? Compute the saliency maps? Compute the Main Sequence? A Matlab Toolbox is ready for that: https://sourceforge.net/p/ema-toolbox/ NEWS The toolbox now also works with the EYEX SDK and with Tobii 4C! Just plug it, turn it on (see the red lights) and run the script! CREDITS A. Gibaldi, M. Vanegas, P.J. Bex, G. Maiello. Evaluation of the Tobii EyeX Eye tracking controller and Matlab toolkit for research, Behavior Research Methods, 2016 NEWS Want to use the EYEX with Python? ...
    Downloads: 0 This Week
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  • 16
    aframe-react

    aframe-react

    Build virtual reality experiences with A-Frame and React

    ...React wastes a lot of cycles and incurs a lot of memory garbage. aframe-react is often abused where it is too easy to place 3D/real-time logic at the React layer, causing poor performance (e.g., doing React renders on ticks). aframe-react applications frequently ignore the prescribed ECS framework of A-Frame. Internally, React does tons of computation to compute what changed, and flushes it to the entire application. It is apparent React ecosystem does not care much about memory as most examples allocate functions and objects in the render method, and where immutables are popular.
    Downloads: 0 This Week
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  • 17

    CUDA-MEME

    Ultrafast scalable motif discovery algorithm using GPU computing

    ...This algorithm is a further extension of CUDA-MEME (based on MEME version 3.5.4) with respect to accuracy and speed and has been tested on a GPU cluster with eight compute nodes and two Fermi-based Tesla S2050 (and Tesla-based Tesla S1070) quad-GPU computing systems, running the Linux OS with the MPICH2 library. The experimental results showed that our algorithm scales well with respect to both dataset sizes and the number of GPUs. At present, OOPS and ZOOPS models are supported, which are sufficient for most motif discovery applications. ...
    Downloads: 0 This Week
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  • 18
    MELTING is a software to compute, for a nucleic acid duplex, the enthalpy and the entropy of the helix coil transition and then the melting temperature. Four types of hybridization are possible : DNA/DNA, RNA/RNA, RNA/DNA and mRNA/RNA.
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    Downloads: 18 This Week
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  • 19

    PeaUtils

    File management utilities: split & join, secure delete, crc/hash

    Suite of file management utilities: split and join files, secure delete, verify checksum and hash values: CRC32. MD5, SHA1, SHA-256, SHA3 and more. Spin-off of PeaZip project.
    Downloads: 9 This Week
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  • 20
    SoftPixel Engine

    SoftPixel Engine

    Realtime 3D engine for game development

    The SoftPixel Engine is an OpenSource high level realtime 3D engine for C++ (GNU C++ & VisualC++). It supports Direct3D11, Direct3D9, OpenGL 1.1 - 4.1, OpenGL|ES 1.1 and OpenGL|ES 2.0 and runs on Windows, Linux, Android and iOS.
    Downloads: 0 This Week
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  • 21

    NeugebauerScalar

    Tools for computing scalars for Neugebauer-type models

    For an arbitrary-size colorant set, this tool will produce a list of Neugebauer primaries in Yates's order, compute the coefficient matrix to convert evaluations of the copula function to scalars, and write code to cache the copula evaluations and compute the scalars.
    Downloads: 0 This Week
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  • 22
    BarraCUDA Fast Short Read Aligner
    Barracuda is a high-speed sequence aligner based on Sanger's BWA and utilizes the latest Nvidia CUDA architecture for accelerating alignments of sequence reads generated by next-generation sequencers.
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  • 23
    Jonction2 - a tool for computing parameters needed to grow the "PN jonctions" of a solar cell using sputtering or other techniques ... Can compute also electro-dynamics of punctiform-masses using [...]
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  • 24
    ClusterShell
    Manage node sets, node groups and execute commands on cluster nodes in parallel. Provides an event-based Python library to improve administration of large compute clusters or server farms. Command line tools: clush and nodeset included.
    Downloads: 5 This Week
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  • 25

    IQM-Plugin-FFI

    FFI - fractal fragmentation index

    This is an IQM plugin to compute the FFI index for binary digital images. This index represents a value for the compactness of an object. FFI is the difference between fractal dimensions of the area and its boundary. Fractal dimensions are computed with the popular Box counting method or the Pyramid method. Details can be found in: Andronache etal. Fractal analysis for studying the evolution of forests, Chaos, Solitons & Fractals, 2016, Vol 91, 310-318.
    Downloads: 0 This Week
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