Search Results for "python data analysis" - Page 138
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Showing 6389 open source projects for "python data analysis"
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pivonvideo
Toolchain automating PIV analysis of video
Particle image velocimetry (PIV) is an optical method of flow visualization. pivonvideo combine together several tools to automatize PIV analysis of whole video extracts, performing image extraction, transformation, analysis and result visualization. -
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DOTS-Finder
Driver Oncogenes and Tumor Suppressors Finder
A key challenge in the analysis of cancer genomes is the identification of driver genes from the vast number of mutations present in a cohort of patients. DOTS-Finder, is a new tool which allows the detection of driver genes through the sequential application of functional and frequentist approaches, and is specifically tailored to the analysis of few tumor samples. We have identified driver genes in the genomic data of 34 tumor types derived from existing exploratory projects... -
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XML Content Provider
Plugin to connect XML data sources to the GIN Server
The GIN Server is a semantic middleware for efficient "bottom-up" data integration and automized semantic analysis for dynamically linked data. The XML Content Provider is a configurable plugin for the GIN Server to integrate any XML data source with a simple structure. -
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RDF Content Provider for iQser GIN
Plugin to connect RDF sources with the GIN Server
GIN Server is a semantic middleware for easy data integration and automized analysis. The extendable architecture allows to plugin in data sources, analytics and event handling. This RDF Content Provider enables access to Semantic Web Content as an RDF file or SPAEQL endpoint. -
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XNDiff
X-ray and Neutron powder pattern simulation analysis
..., differential evolution, Nelder-Mead, ...) can be used -range for fit parameters and further constraints between fit parameters -parallelized (typ. 4-8 threads) TODO (BatchMultiFit): -read and use errorbars from experimental data sets -allow different q-ranges for different data sets in the fits -rewrite and test in Python using e.g. the lmfit module: https://pypi.python.org/pypi/lmfit/ to get rid of Mathematica and to run it on HPC clusters -
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PlaTypUS
Plasmodium Typing Utility Software
The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes. -
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pyteal
Toolkit for Event Analysis and Logging
The Toolkit for Event Analysis and Logging (TEAL) is a pluggable processing pipeline that allows different components to use connectors to log events, have analyzers evaluate the events to get closer to the root cause, report and log these as alerts -
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RDS Surveyor is an RDS/RBDS decoding, monitoring and analysis tool and library. It has migrated to GitHub: https://github.com/ChristopheJacquet/RdsSurveyor/
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Mutascope
Analysis software designed for PCR-amplicon sequencing data.
Mutascope is a software suite designed to analyze data from high throughput sequencing of PCR amplicons, with an emphasis on normal-tumor comparison for the accurate and sensitive identification of low prevalence mutations. -
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GHydraulics
Create EPANET models in QGIS
Open Source Hydraulic Network Analysis Software. A plug-in for Quantum GIS (QGIS) that allows you to create EPANET hydraulic analysis models. EPANET is a popular open source software to analyze water supply networks. -
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Software quality assurance is essential in genomic medicine. Nonetheless there is currently no systematic evaluation of existing computational tools used for whole genome or whole exome sequencing data analysis. We developed a Metamorphic Testing tool that tests three widely used short-read alignment programs (BWA, Bowtie and Bowtie2) in order to systematically evaluate their performance.
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WebChemViewer
A simple program for sharing molecular structures with associated data
Sharing lists of molecular structures with associated chemical properties is a common task in computer-aided drug design and medicinal chemistry. WebChem Viewer is a simple, free, open-source program that generates HTML-formatted output that can be viewed in any modern web browser, on any operating system (including mobile), without requiring the installation of additional software. The output can also be easily incorporated into existing web pages. WebChem Viewer is released under the... -
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SalStat is a small application for statistical analysis emphasising the sciences and social sciences (particularly Psychology). The project is designed around the user interface which has been designed to be simple to use. Think SPSS, but better!
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acp245
ACP245 Suite: Brazil Telematics protocol implementation
This "suite" includes a portable reference implementation and testing tools for ACP245, the automotive Telematics protocol defined by Brazil government. see: http://www.denatran.gov.br/simrav/simrav.asp -
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Provides a read/write library of classes for object oriented languages (Initial goals of PHP and Python) that implement and enforce the iCal standard (RFC 2445).
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Electronic Constructor
Programs for electronics study and research
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TODOs
Search TODO, FIXME and similar comments in project files.
TODOs is a small command-line utility to search TODO, FIXME and similar comments in project files. It is written in Python 3 and licensed under the terms of GNU GPL 3 license. Supported output formats are TXT, HTML and XML. -
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WaTeX is a LaTeX HTML document renderer. Unlike other LaTeX to HTML translators which try to understand TeX, this takes a more high-level approach. You will not be able to convert very complex documents, but it is extensible and produces nice output.
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SE Auditor
Free SEO audit software.
SE Auditor is a program for analyzing web pages for search engines. SE Auditor is application that you can use to view statistical data about your website, in order to improve its position within the Web search results. SE Auditor is addressed to SEO professionals, website designers, developers, website testers and owners. SE Auditor enables you to check meta description, keywords, sitemap, the number of links and keyword consistency, the text/HTML ratio and many more ranking... -
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Grid3D Toolbox
3D grid toolbox for analysis of molecular simulations
"Grid3D Toolbox" is a set of command line tools for visualization and analysis of the results of molecular simulations based on 3-dimensional density maps (grids). Currently, the tools only work with the simulation trajectories generated by the GROMACS simulation package (http://www.gromacs.org/). The generated density maps are saved in the Grid3D native .g3d format and can be visualized using a third party data visualization software. A converter from the .g3d format to .vti, an XML based... -
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SAXS_Analyser
Simplie tool for analysis small angle X-ray data.
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SNVer is a statistical tool for calling common and rare variants in analysis of pool or individual next-generation sequencing data.
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bub - A self-boot-strapping universal activity and "thing" tracker, which can be expanded for tracking tickets and work processes. Goals: Create a new tracking engine, written in PHP, that: 1. Allows tracking of abstract data. 2. Frees our minds for further dreams.
