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It copies as both PNG and TIFF. The program which receives the paste will pick whichever format it prefers. (Mail.app seems to prefer TIFF. At one point, Keynote would paste as PNG.)
We cannot yet copy as PDF, since that's a vector format, and we can most easily copy as a bitmap.
I'm going to close this particular feature request in favor of "Copy/Export as PDF". Sound OK?.
2009-11-09 15:56:24 UTC in Avogadro
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The background should be transparent when copying. No need to select -- just copy everything. The resulting clipboard picture is a transparent PNG.
2009-11-08 03:24:33 UTC in Avogadro
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ghutchis committed revision 3455 to the Open Babel SVN repository, changing 2 files.
2009-11-06 15:16:23 UTC in Open Babel
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ghutchis committed revision 3454 to the Open Babel SVN repository, changing 1 files.
2009-11-06 15:08:25 UTC in Open Babel
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If you can give me a complete list of the basis sets you want, and other options to add, I'd appreciate it.
A collaborator with the Gordon group wrote the extension, so I generally assume it's fairly complete. Suggestions towards missing keywords are very welcome.
2009-10-29 18:05:11 UTC in Avogadro
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From the mailing list:
The position if the labels and values is hardcoded and they are written into
the molecule view.
You never know, how long the translated string is, but even if it is possible
to make the whole dialog and the molecule view greater, the distance of labels
and values is fixed.
It would be better to move the label and values to the bottom of the molecule
view and...
2009-10-29 17:58:10 UTC in Avogadro
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Can you e-mail me? Are you trying to compile from source?
I never see these.
2009-10-29 15:43:09 UTC in Avogadro
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This is a follow-up to PR#1257827
https://sourceforge.net/tracker/?func=detail&aid=1257827&group_id=40728&atid=428740
The key problem is that formal charges should be assigned for some formats (e.g., XYZ) before aromaticity detection can occur.
Many "standard" formats (e.g., SDF, SMILES) already have formal charges marked correctly, so this isn't an issue.
2009-10-29 03:24:50 UTC in Open Babel
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I've worked on code for copy/paste between ChemDraw Mac and Avogadro, but it wasn't ready for release. You should know that Avogadro will happily read CDX and other 2D formats and generate rough 3D coordinates already.
2009-10-26 01:10:44 UTC in Avogadro
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ghutchis made 1 file-release changes.
2009-10-24 19:04:01 UTC in Avogadro
