Home / cellzilla
Name Modified Size Downloads / Week Status
Parent folder
Totals: 9 Items  
Cellzilla2D-3.0 2013-01-15 11 weekly downloads
Cellzilla2D-2.2.7 (for Mathematica 8.0) 2012-04-24 11 weekly downloads
Cellzilla2D-2.2.6 (for Mathematica 8.0) 2012-01-17 11 weekly downloads
Cellzilla2D-2.2 (for Mathematica 8.0) 2011-02-26 11 weekly downloads
Cellzilla2D-2.1 2009-09-05 11 weekly downloads
Cellzilla2D-2.0 2009-06-30 22 weekly downloads
Cellzilla-1.3 2008-12-08 11 weekly downloads
Cellzilla-1.2 for Mathematica Version 6 2008-11-11 11 weekly downloads
cellzilla-1.0.11 2007-07-04 33 weekly downloads
README.txt for xCellerator ========================== Which package should I download? - xCellerator (same thing as xlr8r) - for deterministic simulations in Mathematica. Converts reactions expressed as Cellerator Arrows into Differential equations, then solves the ODES. xlr8r is the successor to the earlier Cellerator program. Requires a minimal installation of MathSBML which is also included in the zip file. - SSA - for stochastic simulations based on Cellerator arrows. The latest version is called xSSAlite and incorporates all Cellerator Mass-Action arrows - Cellzilla - for simulations on fixed-two-dimensional templates. The Latest version is called Cellzilla2D. The simulations may be either deterministic (in which xlr8r is also required) or stochastic (in which case xSSAlite is also required). - CelleratorML - a form of XML used to save Cellerator models. - xlr8r2SBML and SBML2xlr8r - convert between Cellerator models and SBML. Requires xlr8r and MathSBML. - mQhull and mPower - Voronoi/Delaunay/Power Diagram libray interface for Mathematica. These are no longer used by any of the other programs here, but you may find them useful for other work. - MathSBML - basic libraries for SBML and simulation that are used by xlr8r. A basic installation is provided here; for a full installation including all plugins go to http://sbml.org
Source: README.txt, updated 2011-03-08