| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| ppiAsigH-PC2-17Jan2016.Rd | 2016-05-05 | 4.2 MB | |
| README | 2014-12-12 | 1.0 kB | |
| CompSRana.R | 2014-12-12 | 6.8 kB | |
| CompSR.R | 2014-01-02 | 4.8 kB | |
| dataSCM2.Rd | 2014-01-02 | 25.6 MB | |
| DoIntegPIN.R | 2014-01-02 | 1.4 kB | |
| hprdAsigH-13Jun12.Rd | 2014-01-02 | 1.1 MB | |
| sr.Rd | 2014-01-02 | 1.3 MB | |
| sigent.pdf | 2014-01-02 | 156.0 kB | |
| Totals: 9 Items | 32.4 MB | 0 |
README Date: 12 Dec 2014 Author: Andrew Teschendorff DESCRIPTION OF FILES: 1) dataSCM2.Rd: R data object file containing gene expression data matrix, avdataSCM2.m, from the stem cell matrix 2 compendium. Matrix is of size ~17000 genes X 191 samples. The type of cell (i.e hESC=1, iPSC=2 or somatic differentiated=3) is indicated in the phenoSCM2.lv[[1]] entry. Rownames of expression data matrix annotated to Entrez gene IDs. 2) hprdAsigH-13Jun12.Rd: R data object file with a model of PPI network specified by the adjacency matrix hprdAsigH.m. Rownames annotated to Entrez gene IDs. 3) sr.Rd: an auxiliary R object file needed to run the vignette. 4) DoIntegPIN.R: R-function to perform integration of a PPI network with a gene expression data matrix, extracting the maximally connected subnetwork. 5) CompSR.R: R-function to compute the entropy rate plus auxiliary functions. 6) CompSRana.R: R-function to compute the entropy rate analytically assuming detgailed balance (this will speed up the computation). 6) sigent.pdf: vignette/manual pdf.
