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Barracuda is a high-speed sequence aligner based on Sanger's BWA and utilizes the latest Nvidia CUDA architecture for accelerating alignments of sequence reads generated by next-generation sequencers.
Features
- Fixed problems with compiling the software in Ubuntu 16.04
- Tweak: SAMPE 8-core limit is now lifted
- FM-index sequencing read mapper software using NVIDIA CUDA acceleration
- Outputs in SAM format for downstream analyses
- Requires NVIDIA graphics card with compute capability 3.5 or above and at least 1GB VRAM
- Requires NVIDIA CUDA SDK toolkit 6.x or above and NVIDIA driver 340 or above
- BarraCUDA is published on BMC Research Notes 2012, 5:27, doi:10.1186/1756-0500-5-27
- Paper URL: http://www.biomedcentral.com/1756-0500/5/27
- This project is supported by the CUDA centre of excellence at Cambridge University
Project Samples
Categories
Bio-InformaticsLicense
MIT License, GNU General Public License version 3.0 (GPLv3)Follow BarraCUDA Fast Short Read Aligner
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