Download
The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
Features
- Database Search Engines (comet etc.)
- SpecraST (Spectrum Library Search Engine)
- Open-mass Search (Magnum etc.)
- Kojak (Crosslinking Search)
- DDA Analysis
- DISCo (DIA Analysis)
- reSpect (Chimeric Spectrum Analysis)
- MS1 and MS2 Quantitation Labelled and Unlabelled
- Decoy Database Generation
- PeptideProphet (PSM Level Validation)
- iProphet (Peptide Level Validation)
- PTMProphet (Post-Translational Modification Validation)
- Protein Level Validation
- Spectrum Library Generation
- Data Visualization Tools
- Retention Time Cataloging and Prediction
Project Samples
License
GNU General Public License version 2.0 (GPLv2), GNU Library or Lesser General Public License version 2.0 (LGPLv2)Follow SASHIMI
Other Useful Business Software
$300 Free Credits for Your Google Cloud Projects
Launch your next project with $300 in free Google Cloud credits—no strings attached. Test, build, and deploy without risk. Use your credits across the entire Google Cloud platform to find what works best for your needs. After your credits are used, continue with always-free tier services. Only pay when you're ready to scale. Sign up in minutes and start exploring.
