Name | Modified | Size | Downloads / Week |
---|---|---|---|
SAMMate-2.7.4 | 2013-01-28 | ||
SAMMate-2.7 | 2012-11-02 | ||
SAMMate-2.6.1 | 2011-05-28 | ||
SAMMate-2.6 | 2011-05-03 | ||
SAMMate-2.5 | 2011-04-03 | ||
SAMMate-2.4.1 | 2010-11-17 | ||
SAMMate-2.4 | 2010-09-09 | ||
SAMMate-1.0-beta2.3 | 2010-06-18 | ||
SAMMate-1.0-beta2.2 | 2010-04-16 | ||
SAMMate-1.0-beta2.1 | 2010-04-07 | ||
SAMMate-1.0-beta2 | 2010-04-01 | ||
SAMMate-1.0-beta1 | 2009-12-22 | ||
README.txt | 2013-02-14 | 1.2 kB | |
Totals: 13 Items | 1.2 kB | 1 |
========================================================= = SAMMate 2.7.4 release = ========================================================= New features: * SASeq's output format has been updated to include a new RPKM field. * The edgeR function is compatiple with R-2.15.2. The "Path of Rscript.exe" can be set to "C:\Program Files\R\R-2.15.2\bin\Rscript.exe" to call R-2.15.2. * For MAC, the field can be set to /usr/bin/Rscript to call R. * SASeq transcriptome quantificaiton algorithm now processes paired-end and junction reads. * RAEM transcript quantification algorithm now processes junction reads. * The read count information has been improved using junction reads. Bug fixes * The edgeR input is now normalized using the R function calcNormFactors. * Fixed edgeR functionality, SAMMate is now compatible with R 2.14 ========================================================= = SAMMate 2.7 release = ========================================================= New features: * New algorithm SASeq for both oneStep and iterative procedures. * Deprecate iQuant algorithm (replaced with SASeq algorithm). Bug fixes: * Fixed SAM parsing