Donate Share

Postgenomic

Code

Repositories

browse code, statistics, last commit on 2006-04-15 svn co https://postgenomic.svn.sourceforge.net/svnroot/postgenomic postgenomic

Show:

What's happening?

  • Comment: Setting feed categories?

    Logged In: YES user_id=59094 If you have admin rights (is_admin is set to 1 in the relevant MySQL table) then an AJAX category selection doodah appears underneath every blog in the blogs view. Clicking on a category highlights it and updates the database accordingly. 140_read_remote_info.pl, er, shouldn't be there. :) It's a nasty hack because I've always hosted the interface on a...

    2006-08-29 14:59:37 UTC by euanadie

  • patch: new script for assigning a feed to a category

    Maybe I've overseen something similar, but the below scripts allows you to add a feed to a category: ===================================================== #!/usr/bin/perl use strict; use postgenomic qw($DB_HOST $DB_NAME $DB_USER $DB_PASSWORD); use DBI; use Digest::MD5 qw(md5_hex); # connect to the database my $connection_string = sprintf("dbi:mysql:%s:%s", $DB_NAME, $DB_HOST);...

    2006-08-17 10:34:33 UTC by egonw

  • Setting feed categories?

    What's the designated way to set a feed's category? And why is 140_read_remote_info.pl downloading remote files?.

    2006-08-16 14:55:57 UTC by egonw

  • Titles from ACS journal articles not correctly extracted

    Titles from ACS journal articles not correctly extracted DOI pages. The title on those dx.doi.org pages is not found in the , but later wrapped as "Total synthesis of milbemycin .beta.3". I first attempted to make a parse_amerchemsoc.pl, but later realized that this page is from a doi.org page, so parsed by a different parse_$journal.pl...

    2006-08-16 13:53:16 UTC by egonw

  • patch: run via interpreter

    I found it more stable on my kubuntu system to run the perl and python scripts via their interpreter, so I patched my version like: Index: 00_run_pipeline.pl =================================================================== --- 00_run_pipeline.pl (revision 16) +++ 00_run_pipeline.pl (working copy) @@ -36,7 +36,14 @@ sub run_script { my $script = $_[0]; print...

    2006-08-16 13:46:49 UTC by egonw

  • patch: incorrect reference to config field

    It now refers to the unexisting ASCII field in the private.conf. The fix: Index: postgenomic.pm =================================================================== --- postgenomic.pm (revision 16) +++ postgenomic.pm (working copy) @@ -34,7 +34,7 @@ our $PUBMED_WAIT = $conf{"PUBMED_WAIT"}; our $UNIX = $conf{"UNIX"}; -our $ENCODING = $conf{"ASCII"}; +our $ENCODING =...

    2006-08-15 13:19:06 UTC by egonw

  • patch: remove duplicate SQL def of mettings table

    Index: basepairs.sql =================================================================== --- basepairs.sql (revision 16) +++ basepairs.sql (working copy) @@ -13,14 +13,6 @@ valid_from timestamp ); -create table meetings ( -post_text_hash varchar(255) primary key, -conference_id bigint, -added timestamp, -url text, -post_id int -); - create table conferences (...

    2006-08-15 13:18:07 UTC by egonw

  • Postgenomic

    post_stew committed revision 16 to the Postgenomic SVN repository, changing 190 files.

    2006-04-15 19:57:57 UTC by post_stew

  • Postgenomic

    post_stew committed revision 15 to the Postgenomic SVN repository, changing 2 files.

    2006-04-15 19:55:22 UTC by post_stew

  • Postgenomic

    post_stew committed revision 14 to the Postgenomic SVN repository, changing 1 files.

    2006-03-04 10:40:39 UTC by post_stew

Our Numbers