Parallel BWA [pBWA] download

Parallel implementation of BWA (http://bio-bwa.sourceforge.net/) using the OpenMPI library.

Features

Parallel implementation of BWA's aln, sampe, and samse commands
More efficient multithreading than BWA for aln
Can combine parallelism and multithreading for aln
Future releases will see sampe and samse given multithreading options
Unfortunately, pBWA does not support gzipped input read files

Project Activity

See All Activity >

License

MIT License, GNU General Public License version 3.0 (GPLv3)

Follow Parallel BWA [pBWA]

Parallel BWA [pBWA] Web Site

Other Useful Business Software

Our Free Plans just got better! | Auth0

With up to 25k MAUs and unlimited Okta connections, our Free Plan lets you focus on what you do best—building great apps.

You asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your security. Auth0 now, thank yourself later.

Try free now

Rate This Project

User Ratings

5.0 out of 5 stars

★★★★★

★★★★

★★★

★★

★

ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

User Reviews

Filter Reviews:

All

williamdanis Posted 2013-06-09

Easy for use.

2 users found this review helpful.
abynarain Posted 2013-02-26

Error when I try to install using make command: mpicc -g -m64 -O2 -DHAVE_PTHREAD -D_LARGEFILE64_SOURCE utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o pBWA -lm -lz -lpthread -Lbwt_gen -lbwtgen /usr/bin/ld: cannot find -lbwtgen collect2: ld returned 1 exit status make: *** [pBWA] Error 1
bioruan Posted 2012-07-16

Hi, how to install it? I run $ make in the folder and got these lines make[1]: Entering directory `/home/ruan/pkgs/pBWA' make[1]: Nothing to be done for `lib'. make[1]: Leaving directory `/home/ruan/pkgs/pBWA' make[1]: Entering directory `/home/ruan/pkgs/pBWA/bwt_gen' mpicc -c -g -Wall -m64 -O2 -DHAVE_PTHREAD -D_LARGEFILE64_SOURCE bwt_gen.c -o bwt_gen.o make[1]: mpicc: Command not found make[1]: *** [bwt_gen.o] Error 127 make[1]: Leaving directory `/home/ruan/pkgs/pBWA/bwt_gen' make: *** [lib-recur] Error 1

Additional Project Details

Registered

2011-04-03

Report inappropriate content