PANDA

PANDA (Passing Attributes between Networks for Data Assimilation), is a message-passing model to gene regulatory network reconstruction. PANDA integrates multiple sources of biological data, including protein-protein interaction, gene expression, and sequence motif information, in order to reconstruct genome-wide, condition-specific regulatory networks.

PANDA is also available in other programming languages, including:

MATLAB/Octave:
(1) https://drive.google.com/a/channing.harvard.edu/file/d/0BwVdzX3nIj6RamtmNVdKYVk1N2c/view?usp=sharing
(2) https://github.com/QuackenbushLab/matlab-panda

Python:
(1) https://github.com/davidvi/pypanda
(2) https://github.com/QuackenbushLab/pypanda

Bioconductor/R:
http://www.bioconductor.org/packages/devel/bioc/html/pandaR.html

For more information please see: https://sites.google.com/a/channing.harvard.edu/kimberlyglass/tools/panda or email kimberly dot glass at channing dot harvard dot edu

Project Samples

Project Activity

See All Activity >

License

GNU General Public License version 2.0 (GPLv2)

Follow PANDA

PANDA Web Site

nel_h2

Enterprise-grade ITSM, for every business

Give your IT, operations, and business teams the ability to deliver exceptional services—without the complexity.

Freshservice is an intuitive, AI-powered platform that helps IT, operations, and business teams deliver exceptional service without the usual complexity. Automate repetitive tasks, resolve issues faster, and provide seamless support across the organization. From managing incidents and assets to driving smarter decisions, Freshservice makes it easy to stay efficient and scale with confidence.

Try it Free

Rate This Project