mirplant

miRPlant: An Integrated Tool for Identification of Plant miRNA

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Download miRPlant_V4.zip
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Description

please cite:
An J, Lai J, Sajjanhar A, Lehman ML, Nelson CC: miRPlant: an integrated tool for identification of plant miRNA from RNA sequencing data. BMC bioinformatics 2014, 15(1):275.

We will create index for you if you tell us your interested plants (j.anATqut.edu.au).

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Features

  • java source code "miRPlant.zip" can be found clicking "Browse All Files" on the right corner of this windows. Netbeans IDE was used
  • speeded up in v4, the command line version can be found by clicking "Browse All Files"
  • bug fixed. in v2, the read count was incorrect in xxxx.known_miR.result file, when the inputted bam file was generated in BWA etc.
  • bug fixed. in v1, exception appeared when clicking "save image" in the popup window In Mac.

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Additional Project Details

Programming Language

Java

Registered

2014-01-06
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