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methylQA (Version: 0.1.5 (r032))

methylation sequence data quality assessment tool

install

simply run:

make

will generate the binary ready for use. Please visit official site http://methylqa.sourceforge.net/ for documentation.

update

After get the updated source (either by git pull or downloading the tarbal), run

make clean 
make

will generate the new version of binary. (or make cleanlocal if no changes need for kent and samtools)

Used Libraries

Libraries from UCSC Kent source (http://genome.ucsc.edu/admin/jk-install.html) and Samtools (http://samtools.sourceforge.net/) were included in this package. Files were distributed to their own licenses. methyQA currently use Kent source verson v284 and samtools version 0.1.18, the included library here were customized to reduce file size.

Contact

Questions or comments, please contact our mailing list (methylQA@googlegroups.com), thanks!

Source: README.md, updated 2013-12-16