This is an implementation of CWC (Calculus of Wrapped Compartments), a rewriting-based calculus for the representation and simulation of biological systems.
Features
- Gillespie-like simulations over CWC models
- Hybrid stochastic/deterministic semantics
- Dynamic cutoff-based semantical reconfiguration
- Multiple rating functions (mass action, Michaelis-Menten, Hill)
- Multiple instances of simulation
- Online statistics (mean and variance under Grubb's test, quantiles, clustering)
- Optimization for multi-core based on FastFlow framework
- Both shared-memory and distributed versions
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User Reviews
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Nice, thank you