This is an implementation of CWC (Calculus of Wrapped Compartments), a rewriting-based calculus for the representation and simulation of biological systems.

Features

  • Gillespie-like simulations over CWC models
  • Hybrid stochastic/deterministic semantics
  • Dynamic cutoff-based semantical reconfiguration
  • Multiple rating functions (mass action, Michaelis-Menten, Hill)
  • Multiple instances of simulation
  • Online statistics (mean and variance under Grubb's test, quantiles, clustering)
  • Optimization for multi-core based on FastFlow framework
  • Both shared-memory and distributed versions

Project Samples

performance: Speedup statistics: Peaks detection statistics: Mean and Standard Deviation statistics: QT clustering

Project Activity

See All Activity >

Follow CWC Simulator

CWC Simulator Web Site

Other Useful Business Software
Gen AI apps are built with MongoDB Atlas Icon
Gen AI apps are built with MongoDB Atlas

The database for AI-powered applications.

MongoDB Atlas is the developer-friendly database used to build, scale, and run gen AI and LLM-powered apps—without needing a separate vector database. Atlas offers built-in vector search, global availability across 115+ regions, and flexible document modeling. Start building AI apps faster, all in one place.
Start Free
Rate This Project
Login To Rate This Project

User Ratings

5.0 out of 5 stars
★★★★★
★★★★
★★★
★★
★
1
0
0
0
0
ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

User Reviews

Filter Reviews:
All
  • thelmadavis Posted 2013-06-22
    Nice, thank you
    1 user found this review helpful.
Read more reviews >

Additional Project Details

Registered

2010-08-12
Report inappropriate content