CodaChrome

CodaChrome is a tool for visually exploring how the proteome of a bacterium of interest relates to every other finished bacterial genome in GenBank.

Features

Gene/Species "Select" Tool - real time substring searches
"Sort" rows by a single protein, segment of adjacent proteins or whole proteome
"Normalized Sort" allows you to sort by whole proteome identity normalized by replicon length
"Save View" - Saves current view to an image file
"Blast Online" searches blast alignments on NCBI's website
Zoom in/out, view selection, zoom all out
Ctrl/Command click on gene arrow and drag to select large segments
Gene and Species arrows can can be click dragged or moved with arrow keys

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