CDSmapper

Converts DNA or amino-acid feature GFF3 coordinates contained within sub-features (e.g. ORF/CDS) to coordinates relative to the parent sub-features (e.g. contig/scaffold). Also includes tools for proteogenomic gene validation and gene discovery.

Features

Converts DNA or amino-acid feature GFF3 coordinates contained within sub-features (e.g. ORF/CDS) to coordinates relative to the parent sub-features (e.g. contig/scaffold).
Includes tools to compare mapped proteogenomic peptide data to gene-annotations for validation and gene discovery
reports frameshift errors in CDS annotations
reports potential exon-boundary errors in CDS annotations
reports potential new genes (proteogenomic peptides non-overlapping with gene annotations)

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