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APL@Voro a tool for model bilayer simulation analysis.

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APL@Voro is a program designed to aid in the analysis of lipid bilayer simulations carried out by gromacs. It calculates the area per lipid and the membrane thickness even for mixed bilayers. Colored Voronoi diagrams and different types of plots are presented in an interactive environment.

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  • Reading .pdb and .trr/xtc files creatd for lipid bilayers
  • Calculating Voronoi diagrams for different atom selections
  • Calculate the area per lipid and membrane thickness
  • Access bilayer features for single lipids
  • Generate 2D and 3D plots

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Education, Science/Research

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