AnnotateGenomicRegions is a Java based web application that finds overlapping and/or neighboring genome annotations in a list of user-supplied genomic regions. As opposed to tools like CisGenome, BedTools, Bioconductor ChIPpeakAnno, or Galaxy, this tool is extremely easy to use and doesn't require downloading and installing software on the computer of the user nor any specific knowledge of the annotation software. Just copy and paste your regions or browse to a local text file containing your genomic regions. Several hundreds of thousands of genomic regions can be annotated with tens of known genome annotations at the same time.
Output is provided as a zip file containing a tab-delimited text file.
AnnotateGenomicRegions has been developed for Glassfishv3.

Features

  • Copy and paste annotation of genomic regions
  • highly customizable

Project Samples

AnnotateGenomicRegions (JSF)

Project Activity

See All Activity >

Follow AnnotateGenomicRegions

AnnotateGenomicRegions Web Site

Other Useful Business Software
Gen AI apps are built with MongoDB Atlas Icon
Gen AI apps are built with MongoDB Atlas

The database for AI-powered applications.

MongoDB Atlas is the developer-friendly database used to build, scale, and run gen AI and LLM-powered apps—without needing a separate vector database. Atlas offers built-in vector search, global availability across 115+ regions, and flexible document modeling. Start building AI apps faster, all in one place.
Start Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of AnnotateGenomicRegions!

Additional Project Details

Registered

2012-02-01
Report inappropriate content