AnnotateGenomicRegions is a Java based web application that finds overlapping and/or neighboring genome annotations in a list of user-supplied genomic regions. As opposed to tools like CisGenome, BedTools, Bioconductor ChIPpeakAnno, or Galaxy, this tool is extremely easy to use and doesn't require downloading and installing software on the computer of the user nor any specific knowledge of the annotation software. Just copy and paste your regions or browse to a local text file containing your genomic regions. Several hundreds of thousands of genomic regions can be annotated with tens of known genome annotations at the same time.
Output is provided as a zip file containing a tab-delimited text file.
AnnotateGenomicRegions has been developed for Glassfishv3.

Features

  • Copy and paste annotation of genomic regions
  • highly customizable

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AnnotateGenomicRegions (JSF)

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Registered

2012-02-01
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