ALCHEMY is a genotype calling algorithm for Affymetrix and Illumina products which is not based on clustering methods. Features include explicit handling of reduced heterozygosity due to inbreeding and accurate results with small sample sizes

Features

  • Populaton genetic model based SNP genotype calling
  • Simultaneous estimation of per-sample inbreeding coefficients, allele frequencies, and genotypes
  • Bayesian model provides posterior probabilities of genotype correctness as quality measures
  • Growing number of scripts and supporting programs for validation of genotypes against control data and output reformating needs
  • Multithreaded program for parallel execution on multi-CPU/core systems
  • Non-clustering based methods can handle small sample sets for empirical optimization of sample preparation techniques and accurate calling of SNPs missing genotype classes

Project Activity

See All Activity >

Follow ALCHEMY

ALCHEMY Web Site

Other Useful Business Software
$300 in Free Credit Towards Top Cloud Services Icon
$300 in Free Credit Towards Top Cloud Services

Build VMs, containers, AI, databases, storage—all in one place.

Start your project in minutes. After credits run out, 20+ products include free monthly usage. Only pay when you're ready to scale.
Get Started
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of ALCHEMY!

Additional Project Details

Registered

2009-10-23
Report inappropriate content