PseudoDomain

Accurate identification of pseudogenes without genome annotations

Brought to you by: zhangy72

Downloads: 0 This Week

Last Update: 2013-09-16

Get an email when there's a new version of PseudoDomain

Pseudogenes are dysfunctional DNA sequences that share sequence similarities with functional genes. Accurate identiﬁcation of pseudogenes is important to understand biological and evolutionary histories of genomes and genes. PseudoDomain is a processed pseudogene identification tool with high sensitivity and low false positive rate. It can identify pseudogenes in species that do not have accurate genome annotations. In addition, it can accurately predict the number and positions of frameshifts within putative pseudogenes.

Project Activity

See All Activity >

Follow PseudoDomain

PseudoDomain Web Site

Other Useful Business Software

Gen AI apps are built with MongoDB Atlas Icon

Gen AI apps are built with MongoDB Atlas

The database for AI-powered applications.

MongoDB Atlas is the developer-friendly database used to build, scale, and run gen AI and LLM-powered apps—without needing a separate vector database. Atlas offers built-in vector search, global availability across 115+ regions, and flexible document modeling. Start building AI apps faster, all in one place.

Start Free

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of PseudoDomain!

Additional Project Details

Registered

2012-05-10

Report inappropriate content

Recommended Projects

EvidentialGene
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University, see http://arthropods.eugenes.org/EvidentialGene/ Construction refers...
Re-Annotator
The microarray technology is an established approach for high throughput gene expression analysis. An accurate mapping between array probes and the genes that they are targeting is essential for generating accurate biological findings. The manufacturers typically provide such annotation tables....
SeqSelector
The SeqSelector toolset is a suite of user-friendly, platform independent python scripts to facilitate selection of sequences for targeted enrichment of next-generation libraries through hybridization-based sequence capture. The scripts require no knowledge of programming, and can be applied to...
DUK
DUK is an accurate, fast, and efficient program to detect whether a query DNA sequence partially or totally matches given reference sequences.
PGAP
PGAP is a pan-genomes analysis pipeline developed with Perl. It could perform five analytic functions with only one command, including cluster analysis of functional genes, pan-genome profile analysis, genetic variation analysis of functional genes, species evolution analysis and function...