Download
ADSBET2: AUTOMATED DETERMINATION OF SALT BRIDGE ENERGY TERMS, version 2.0
Author:c)--Arnab Nayek, Parth Sarthi Sen Gupta, Shyamashree Banerjee,Vishma Pratap Sur, Pratay Seth, Sunit Das, Rifat Nawaz Ul Islam and Amal K bandyopadhyay*
Department of Biotechnology,The University of Burdwan, India
Features
- SBS Energy-terms in general [kcal/mol] and normalized [kcal/mol/bond] format, Only the LATER is comparable among SBSs and hence help for their statictical analyses.
- Combines energy terms in NSBS and ISBS format; NSBS-> Networked SBS forms - 1:2 [dimer], 1:3 [trimer] etc; NSBS types-> ie base-networked SBS and acid networked SBS; ISBS- Isolated SBS form - 1:1 form[monomer]
- Accessible surface area ie ASA in NSBS and ISBS form; the program uses SURFACE-RACER [option 4] /POPS [option 5] /NACCESS option 6]
- ddGprot [hence ddGnet] in two categories based on source of charges; ddGprot-I: partial charges due to all-sides [Nayek et al, 2014]; ddGprot-II: Partial charges due to acidic and basic residues [Kumar and Nussinov, 1999]
- two models for interacting side-chains: Model-1: As in ADSBET [Nayek et al, 2015]; Model-2: A New additional model [the most popular and well adapted one]
Project Samples
Follow ADSBET2
Other Useful Business Software
Gen AI apps are built with MongoDB Atlas
MongoDB Atlas provides built-in vector search and a flexible document model so developers can build, scale, and run gen AI apps without stitching together multiple databases. From LLM integration to semantic search, Atlas simplifies your AI architecture—and it’s free to get started.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of ADSBET2!