#9 Chimera cleaning failure message

[Andy Pang]

Hi,
I am trying to assemble Illumina Moleculo data using the Celera assembler. Basically these are long fragments sequences. I encounter an assertion failure error when I run the assembler. Please see below. Any help will be greatly appreciated.
Andy

Stack trace:

at /home/apang/tools/wgs-7.0/Linux-amd64/bin/runCA line 1237
main::caFailure('chimera cleaning failed', '/home/apang/fly/fly_moleculo/cabog_moleculo_only_test2_083013...') called at /home/apang/tools/wgs-7.0/Linux-amd64/bin/runCA line 3781
main::overlapTrim() called at /home/apang/tools/wgs-7.0/Linux-amd64/bin/runCA line 5876

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Last few lines of the relevant log file (/home/apang/fly/fly_moleculo/cabog_moleculo_only_test2_083013/0-overlaptrim/fly_moleculo_only_test2.chimera.err):

chimera: chimera.C:932: void process(AS_IID, const clear_t, gkStore, bool, const overlapList*): Assertion `interval > 0' failed.

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Failure message:

chimera cleaning failed