Whole-Genome Shotgun Assembler / Patches / #1 Speed up grep of lay files in runPartitions.sh

#1 Speed up grep of lay files in runPartitions.sh

Milestone: Unstable_(example)

Status: closed

Owner: Sergey Koren

Labels: None

Priority: 5

Updated: 2015-02-03

Created: 2012-10-09

Creator: eernst

Private: No

Only looking for at least one occurrence of "{LAY", so no need to keep searching after finding it. This can be expensive for large layout files, especially with many processes accessing the same volume. grep -c counts matching lines.

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eernst - 2012-10-09

Avoid long grep of layout files in generated runPartitions.sh scripts

pacBioToCA.pl.patch

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Brian Walenz - 2015-02-03

Thanks, nice optimization. Probably would have been better to send to the mailing list. I'm not sure if anyone noticed this until now.

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Brian Walenz - 2015-02-03

status: open --> closed

assigned_to: Sergey Koren

Group: --> Unstable_(example)
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Speed up grep of lay files in runPartitions.sh

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#1 Speed up grep of lay files in runPartitions.sh

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