[wgs-assembler-users] Missing output fasta files and information from qc file, .

[Miguel G. <mi...@uj...>]

Dear all,

I have finished my assembly using wgs 8.2 assembler but in my ouput 
folder, I only have the .asm and the .qc file, without fasta files.

I didn't have any error during all the process apart of this one in the 
last step:
....
/----------------------------------------START Fri Jan 23 10:25:04 2015//
///usr/bin/env perl /miquel/wgs-8.2/Linux-amd64/bin/caqc.pl -euid 
/reads/a6/9-terminator/a6.asm//
//Can't locate Statistics/Descriptive.pm in @INC (@INC contains: 
/usr/local/lib64/perl5 /usr/local/share/perl5 
/usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl 
/usr/lib64/perl5 /usr/share/perl5 .) at 
/miquel/wgs-8.2/Linux-amd64/bin/caqc.pl line 18.//
//BEGIN failed--compilation aborted at 
/miquel/wgs-8.2/Linux-amd64/bin/caqc.pl line 18.//
//----------------------------------------END Fri Jan 23 10:25:04 2015 
(0 seconds)//
//ERROR: Failed with signal INT (2)//
//The Cleaner has arrived.  Doing 'none'./

And the first lines from my qc file:

/[Unitig Consensus]//
//NumColumnsInUnitigs=5385950647//
//NumGapsInUnitigs=378938//
//NumRunsOfGapsInUnitigReads=13067488//
//
//[Contig Consensus]//
//NumColumnsInUnitigs=312297292//
//NumGapsInUnitigs=398693//
//NumRunsOfGapsInUnitigReads=10707275//
//NumColumnsInContigs=312248428//
//NumGapsInContigs=347998//
//NumRunsOfGapsInContigReads=9673938//
//NumAAMismatches=171477362//
//NumVARStringsWithFlankingGaps=80202//
//
//[Read Depth Histogram]//
//d    < 3Kbp    < 10Kbp   < 1Mbp    < inf//
//0    162862     601904     619465     0 //
//1    136303     189622     163968     0/
...
...

Thank you,



Miquel