From: Sergio M. V. <sm...@gl...> - 2004-03-26 19:45:40
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Hi all, I load my protein pdb file and I'm trying to add the missing residues to this molecule. Anyone knows how to do it? Thanks in advance, Sergio. |
From: Ezequiel P. <za...@sl...> - 2004-03-26 20:02:54
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Oi Sergio, You should pick (PkAt) either the atom N or C depending towards which end you want to extend the chain: N ==> to extend the N-terminus C ==> to extend the C-terminus and then select the residue you want to add from the Build->Residue menu. Um abraco, Zac On Fri, 26 Mar 2004, Sergio Modesto Vechi wrote: | Hi all, | | | I load my protein pdb file and I'm trying to add the missing residues to | this molecule. Anyone knows how to do it? | | Thanks in advance, | | | Sergio. | | | | ------------------------------------------------------- | This SF.Net email is sponsored by: IBM Linux Tutorials | Free Linux tutorial presented by Daniel Robbins, President and CEO of | GenToo technologies. Learn everything from fundamentals to system | administration.http://ads.osdn.com/?ad_id=1470&alloc_id=3638&op=click | _______________________________________________ | PyMOL-users mailing list | PyM...@li... | https://lists.sourceforge.net/lists/listinfo/pymol-users | Ezequiel Panepucci, Ph.D. - Laboratory of Prof. Axel Brunger HHMI - Stanford University Phone: 650-736-1714 Cell: 650-714-9414 |
From: Warren D. <wa...@de...> - 2004-03-26 20:31:31
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Sergio, PyMOL probably isn't the best tool for doing this, but it can be done: To add to a free N-terminus, pick (ctrl-middle-click) the N-terminal nitrogen, and then press Alt-Letter (on Macs, Option-Letter) for the amino acid you want: For example: Alt-G adds a glycine To add onto the C-terminus, pick the C-terminal carbon, and do the same. If you'd like to remove hydrogens after you're done, type remove hydro Or select "Auto-remove hydrogens" from the Setting menu. Cheers, Warren > -----Original Message----- > From: pym...@li... > [mailto:pym...@li...] On Behalf Of > Sergio Modesto Vechi > Sent: Friday, March 26, 2004 11:42 AM > To: pym...@li... > Subject: [PyMOL] adding residues > > Hi all, > > > I load my protein pdb file and I'm trying to add the missing > residues to this molecule. Anyone knows how to do it? > > Thanks in advance, > > > Sergio. > > > > ------------------------------------------------------- > This SF.Net email is sponsored by: IBM Linux Tutorials Free > Linux tutorial presented by Daniel Robbins, President and CEO > of GenToo technologies. Learn everything from fundamentals to > system > administration.http://ads.osdn.com/?ad_id=1470&alloc_id=3638&op=click > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users > |