From: Jason V. <jas...@sc...> - 2012-04-30 17:15:06
|
Greetings, This is just a quick note to let you know that as of revision 3997 PyMOL has an improved plugin/script manager. This system was written by Thomas Holder as part of his PyMOL Open Source Fellowship. Some new features include: * install script/plugin from the PyMOLWiki directly * install from a URL * install from a custom path on your file system * setup and install into multiple repositories * scripts/plugins requiring a citation will bring up a dialog telling you so (authors, please see the docs for information on how to require a citation) * ...and more. Please feel free to test the code and get used to the new manager. If you like it, please send Thomas a note of thanks. We will be starting another round of the PyMOL Open Source Fellowship soon. If you're interested keep an eye out for the call for applications. Cheers, -- Jason -- Jason Vertrees, PhD PyMOL Product Manager Schrödinger, LLC (e) Jas...@sc... (o) +1 (603) 374-7120 |
From: Michael B. <mb...@de...> - 2012-05-02 13:22:12
|
On Mon, Apr 30, 2012 at 01:14:39PM -0400, Jason Vertrees wrote: > This is just a quick note to let you know that as of revision 3997 > PyMOL has an improved plugin/script manager. This system was written > by Thomas Holder as part of his PyMOL Open Source Fellowship. Some new > features include: > * install script/plugin from the PyMOLWiki directly > * install from a URL > * install from a custom path on your file system > * setup and install into multiple repositories > * scripts/plugins requiring a citation will bring up a dialog telling > you so (authors, please see the docs for information on how to require > a citation) > * ...and more. One thing which bugged me about scripts and the pymol wiki is that it has never been very clear about what license those scripts/plugin were under (PyMOL license, other open source license, all rights reserved...). Maybe this has changed in the meantime (I haven't looked for a while), but it might be nice if the plugin manager could help a bit by at least offering plugins/scripts to declare their license as part of some (presumably existing) meta-information. Michael |
From: Thomas H. <sp...@us...> - 2012-05-02 13:34:29
|
Hi Michael, meta information is implemented in the new plugin system. The syntax is very simple, just put it at the beginning of the python file like this: # License: BSD-2-Clause # Author: Your Name # Version: 1.0 ''' Plugin XYZ for PyMOL Here some more general description, link to PyMOLWiki page etc. ''' The hash commented block in the first lines is parsed and shown in a info box, which can be accessed from the plugin manager. Also on the PyMOLWiki we recently introduced a info-box template which has similar fields for meta information. Pages which use this template show a friendly readable box floating in the upper right corner of the page (example: http://pymolwiki.org/index.php/Uniprot_features ). Cheers, Thomas On 05/02/2012 03:21 PM, Michael Banck wrote: > On Mon, Apr 30, 2012 at 01:14:39PM -0400, Jason Vertrees wrote: >> This is just a quick note to let you know that as of revision 3997 >> PyMOL has an improved plugin/script manager. This system was written >> by Thomas Holder as part of his PyMOL Open Source Fellowship. Some new >> features include: >> * install script/plugin from the PyMOLWiki directly >> * install from a URL >> * install from a custom path on your file system >> * setup and install into multiple repositories >> * scripts/plugins requiring a citation will bring up a dialog telling >> you so (authors, please see the docs for information on how to require >> a citation) >> * ...and more. > > One thing which bugged me about scripts and the pymol wiki is that it > has never been very clear about what license those scripts/plugin were > under (PyMOL license, other open source license, all rights > reserved...). Maybe this has changed in the meantime (I haven't looked > for a while), but it might be nice if the plugin manager could help a > bit by at least offering plugins/scripts to declare their license as > part of some (presumably existing) meta-information. > > Michael -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen |
From: Jason V. <jas...@sc...> - 2012-05-02 13:40:32
|
Hi Michael, Thanks for this feedback. Since the inception the Script Library on the PyMOLWiki the policy is that all deposited scripts are open-source: http://pymolwiki.org/index.php/Category_talk:Script_Library#Policy. This link is "Policy" from the PyMOLWiki Scripts page. Cheers, -- Jason On Wed, May 2, 2012 at 9:21 AM, Michael Banck <mb...@de...> wrote: > On Mon, Apr 30, 2012 at 01:14:39PM -0400, Jason Vertrees wrote: >> This is just a quick note to let you know that as of revision 3997 >> PyMOL has an improved plugin/script manager. This system was written >> by Thomas Holder as part of his PyMOL Open Source Fellowship. Some new >> features include: >> * install script/plugin from the PyMOLWiki directly >> * install from a URL >> * install from a custom path on your file system >> * setup and install into multiple repositories >> * scripts/plugins requiring a citation will bring up a dialog telling >> you so (authors, please see the docs for information on how to require >> a citation) >> * ...and more. > > One thing which bugged me about scripts and the pymol wiki is that it > has never been very clear about what license those scripts/plugin were > under (PyMOL license, other open source license, all rights > reserved...). Maybe this has changed in the meantime (I haven't looked > for a while), but it might be nice if the plugin manager could help a > bit by at least offering plugins/scripts to declare their license as > part of some (presumably existing) meta-information. > > > Michael > > ------------------------------------------------------------------------------ > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... -- Jason Vertrees, PhD PyMOL Product Manager Schrödinger, LLC (e) Jas...@sc... (o) +1 (603) 374-7120 |
From: Michael B. <mb...@de...> - 2012-05-02 13:43:56
|
Hi, On Wed, May 02, 2012 at 09:39:59AM -0400, Jason Vertrees wrote: > Thanks for this feedback. Since the inception the Script Library on > the PyMOLWiki the policy is that all deposited scripts are > open-source: http://pymolwiki.org/index.php/Category_talk:Script_Library#Policy. > This link is "Policy" from the PyMOLWiki Scripts page. Awesome! (also about the meta-information in the plugin manager) Michael |
From: Marius R. <mar...@gm...> - 2012-05-05 08:49:54
|
Hello, Was the plugin manager tested with the incentive builds on mac osx? Is the setup procedure similar? Thank you Marius On Wed, May 2, 2012 at 3:43 PM, Michael Banck <mb...@de...> wrote: > Hi, > > On Wed, May 02, 2012 at 09:39:59AM -0400, Jason Vertrees wrote: >> Thanks for this feedback. Since the inception the Script Library on >> the PyMOLWiki the policy is that all deposited scripts are >> open-source: http://pymolwiki.org/index.php/Category_talk:Script_Library#Policy. >> This link is "Policy" from the PyMOLWiki Scripts page. > > Awesome! (also about the meta-information in the plugin manager) > > > Michael > > ------------------------------------------------------------------------------ > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... |
From: Thomas H. <sp...@us...> - 2012-05-05 16:43:03
|
Hi Marius, on Mac I only tested open-source fink builds, which worked fine. Cheers, Thomas Marius Retegan wrote, On 05/05/12 10:49: > Hello, > > Was the plugin manager tested with the incentive builds on mac osx? Is > the setup procedure similar? > > Thank you > Marius -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen |
From: Jason V. <jas...@sc...> - 2012-05-05 17:00:47
|
Hi Marius, The new plugin code was built and tested on Mac OS X before release. It worked just as well as on other platforms. Please let us know if you discover any issues. Cheers, -- Jason On Sat, May 5, 2012 at 4:49 AM, Marius Retegan <mar...@gm...> wrote: > Hello, > > Was the plugin manager tested with the incentive builds on mac osx? Is > the setup procedure similar? > > Thank you > Marius > > On Wed, May 2, 2012 at 3:43 PM, Michael Banck <mb...@de...> wrote: >> Hi, >> >> On Wed, May 02, 2012 at 09:39:59AM -0400, Jason Vertrees wrote: >>> Thanks for this feedback. Since the inception the Script Library on >>> the PyMOLWiki the policy is that all deposited scripts are >>> open-source: http://pymolwiki.org/index.php/Category_talk:Script_Library#Policy. >>> This link is "Policy" from the PyMOLWiki Scripts page. >> >> Awesome! (also about the meta-information in the plugin manager) >> >> >> Michael >> >> ------------------------------------------------------------------------------ >> Live Security Virtual Conference >> Exclusive live event will cover all the ways today's security and >> threat landscape has changed and how IT managers can respond. Discussions >> will include endpoint security, mobile security and the latest in malware >> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >> _______________________________________________ >> PyMOL-users mailing list (PyM...@li...) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pym...@li... > > ------------------------------------------------------------------------------ > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... -- Jason Vertrees, PhD PyMOL Product Manager Schrödinger, LLC (e) Jas...@sc... (o) +1 (603) 374-7120 |
From: Marius R. <mar...@gm...> - 2012-05-05 20:25:17
|
Maybe I'm doing something wrong... I started by cloning the code from github, set the PYTHONPATH variable to it, but it does not seem to be taken into account by Pymol. python import sys print sys.path python end ['', '/Applications/MacPyMOL.app/pymol/modules', '/Applications/MacPyMOL.app/Contents/MacOS', '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/setuptools-0.6c11-py2.7.egg', '/Applications/MacPyMOL.app/pymol/modules', '/Applications/MacPyMOL.app/pymol/ext/lib/python27.zip', '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7', '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/plat-darwin', '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/plat-mac', '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/plat-mac/lib-scriptpackages', '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/lib-tk', '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/lib-old', '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/lib-dynload', '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages', '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/PIL', '/Applications/MacPyMOL.app/pymol/freemol/libpy'] On Sat, May 5, 2012 at 7:00 PM, Jason Vertrees <jas...@sc...> wrote: > Hi Marius, > > The new plugin code was built and tested on Mac OS X before release. > It worked just as well as on other platforms. > > Please let us know if you discover any issues. > > Cheers, > > -- Jason > > On Sat, May 5, 2012 at 4:49 AM, Marius Retegan > <mar...@gm...> wrote: >> Hello, >> >> Was the plugin manager tested with the incentive builds on mac osx? Is >> the setup procedure similar? >> >> Thank you >> Marius >> >> On Wed, May 2, 2012 at 3:43 PM, Michael Banck <mb...@de...> wrote: >>> Hi, >>> >>> On Wed, May 02, 2012 at 09:39:59AM -0400, Jason Vertrees wrote: >>>> Thanks for this feedback. Since the inception the Script Library on >>>> the PyMOLWiki the policy is that all deposited scripts are >>>> open-source: http://pymolwiki.org/index.php/Category_talk:Script_Library#Policy. >>>> This link is "Policy" from the PyMOLWiki Scripts page. >>> >>> Awesome! (also about the meta-information in the plugin manager) >>> >>> >>> Michael >>> >>> ------------------------------------------------------------------------------ >>> Live Security Virtual Conference >>> Exclusive live event will cover all the ways today's security and >>> threat landscape has changed and how IT managers can respond. Discussions >>> will include endpoint security, mobile security and the latest in malware >>> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >>> _______________________________________________ >>> PyMOL-users mailing list (PyM...@li...) >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>> Archives: http://www.mail-archive.com/pym...@li... >> >> ------------------------------------------------------------------------------ >> Live Security Virtual Conference >> Exclusive live event will cover all the ways today's security and >> threat landscape has changed and how IT managers can respond. Discussions >> will include endpoint security, mobile security and the latest in malware >> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >> _______________________________________________ >> PyMOL-users mailing list (PyM...@li...) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pym...@li... > > > > -- > Jason Vertrees, PhD > PyMOL Product Manager > Schrödinger, LLC > > (e) Jas...@sc... > (o) +1 (603) 374-7120 |
From: Jason V. <jas...@sc...> - 2012-05-06 13:32:07
|
Hi Marius, Just use the new open-source code in PyMOL. The plugin system is now built-in. If you try to integrate the plugin code yourself, it might take a little work. Cheers, -- Jason On Sat, May 5, 2012 at 4:24 PM, Marius Retegan <mar...@gm...> wrote: > Maybe I'm doing something wrong... > I started by cloning the code from github, set the PYTHONPATH variable > to it, but it does not seem to be taken into account by Pymol. > > python > import sys > print sys.path > python end > > ['', '/Applications/MacPyMOL.app/pymol/modules', > '/Applications/MacPyMOL.app/Contents/MacOS', > '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/setuptools-0.6c11-py2.7.egg', > '/Applications/MacPyMOL.app/pymol/modules', > '/Applications/MacPyMOL.app/pymol/ext/lib/python27.zip', > '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7', > '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/plat-darwin', > '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/plat-mac', > '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/plat-mac/lib-scriptpackages', > '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/lib-tk', > '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/lib-old', > '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/lib-dynload', > '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages', > '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/PIL', > '/Applications/MacPyMOL.app/pymol/freemol/libpy'] > > > On Sat, May 5, 2012 at 7:00 PM, Jason Vertrees > <jas...@sc...> wrote: >> Hi Marius, >> >> The new plugin code was built and tested on Mac OS X before release. >> It worked just as well as on other platforms. >> >> Please let us know if you discover any issues. >> >> Cheers, >> >> -- Jason >> >> On Sat, May 5, 2012 at 4:49 AM, Marius Retegan >> <mar...@gm...> wrote: >>> Hello, >>> >>> Was the plugin manager tested with the incentive builds on mac osx? Is >>> the setup procedure similar? >>> >>> Thank you >>> Marius >>> >>> On Wed, May 2, 2012 at 3:43 PM, Michael Banck <mb...@de...> wrote: >>>> Hi, >>>> >>>> On Wed, May 02, 2012 at 09:39:59AM -0400, Jason Vertrees wrote: >>>>> Thanks for this feedback. Since the inception the Script Library on >>>>> the PyMOLWiki the policy is that all deposited scripts are >>>>> open-source: http://pymolwiki.org/index.php/Category_talk:Script_Library#Policy. >>>>> This link is "Policy" from the PyMOLWiki Scripts page. >>>> >>>> Awesome! (also about the meta-information in the plugin manager) >>>> >>>> >>>> Michael >>>> >>>> ------------------------------------------------------------------------------ >>>> Live Security Virtual Conference >>>> Exclusive live event will cover all the ways today's security and >>>> threat landscape has changed and how IT managers can respond. Discussions >>>> will include endpoint security, mobile security and the latest in malware >>>> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >>>> _______________________________________________ >>>> PyMOL-users mailing list (PyM...@li...) >>>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>>> Archives: http://www.mail-archive.com/pym...@li... >>> >>> ------------------------------------------------------------------------------ >>> Live Security Virtual Conference >>> Exclusive live event will cover all the ways today's security and >>> threat landscape has changed and how IT managers can respond. Discussions >>> will include endpoint security, mobile security and the latest in malware >>> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >>> _______________________________________________ >>> PyMOL-users mailing list (PyM...@li...) >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>> Archives: http://www.mail-archive.com/pym...@li... >> >> >> >> -- >> Jason Vertrees, PhD >> PyMOL Product Manager >> Schrödinger, LLC >> >> (e) Jas...@sc... >> (o) +1 (603) 374-7120 -- Jason Vertrees, PhD PyMOL Product Manager Schrödinger, LLC (e) Jas...@sc... (o) +1 (603) 374-7120 |
From: Marius R. <mar...@gm...> - 2012-05-06 14:10:56
|
Hi Jason, I'll do that. The problem is that the new open-source branch does not compile with the vmd plugins. I've open a bug on the bug tracker on SourceForge. Thank you, Marius On Sun, May 6, 2012 at 3:31 PM, Jason Vertrees <jas...@sc...> wrote: > Hi Marius, > > Just use the new open-source code in PyMOL. The plugin system is now > built-in. If you try to integrate the plugin code yourself, it might > take a little work. > > Cheers, > > -- Jason > > On Sat, May 5, 2012 at 4:24 PM, Marius Retegan > <mar...@gm...> wrote: >> Maybe I'm doing something wrong... >> I started by cloning the code from github, set the PYTHONPATH variable >> to it, but it does not seem to be taken into account by Pymol. >> >> python >> import sys >> print sys.path >> python end >> >> ['', '/Applications/MacPyMOL.app/pymol/modules', >> '/Applications/MacPyMOL.app/Contents/MacOS', >> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/setuptools-0.6c11-py2.7.egg', >> '/Applications/MacPyMOL.app/pymol/modules', >> '/Applications/MacPyMOL.app/pymol/ext/lib/python27.zip', >> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7', >> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/plat-darwin', >> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/plat-mac', >> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/plat-mac/lib-scriptpackages', >> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/lib-tk', >> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/lib-old', >> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/lib-dynload', >> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages', >> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/PIL', >> '/Applications/MacPyMOL.app/pymol/freemol/libpy'] >> >> >> On Sat, May 5, 2012 at 7:00 PM, Jason Vertrees >> <jas...@sc...> wrote: >>> Hi Marius, >>> >>> The new plugin code was built and tested on Mac OS X before release. >>> It worked just as well as on other platforms. >>> >>> Please let us know if you discover any issues. >>> >>> Cheers, >>> >>> -- Jason >>> >>> On Sat, May 5, 2012 at 4:49 AM, Marius Retegan >>> <mar...@gm...> wrote: >>>> Hello, >>>> >>>> Was the plugin manager tested with the incentive builds on mac osx? Is >>>> the setup procedure similar? >>>> >>>> Thank you >>>> Marius >>>> >>>> On Wed, May 2, 2012 at 3:43 PM, Michael Banck <mb...@de...> wrote: >>>>> Hi, >>>>> >>>>> On Wed, May 02, 2012 at 09:39:59AM -0400, Jason Vertrees wrote: >>>>>> Thanks for this feedback. Since the inception the Script Library on >>>>>> the PyMOLWiki the policy is that all deposited scripts are >>>>>> open-source: http://pymolwiki.org/index.php/Category_talk:Script_Library#Policy. >>>>>> This link is "Policy" from the PyMOLWiki Scripts page. >>>>> >>>>> Awesome! (also about the meta-information in the plugin manager) >>>>> >>>>> >>>>> Michael >>>>> >>>>> ------------------------------------------------------------------------------ >>>>> Live Security Virtual Conference >>>>> Exclusive live event will cover all the ways today's security and >>>>> threat landscape has changed and how IT managers can respond. Discussions >>>>> will include endpoint security, mobile security and the latest in malware >>>>> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >>>>> _______________________________________________ >>>>> PyMOL-users mailing list (PyM...@li...) >>>>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>>>> Archives: http://www.mail-archive.com/pym...@li... >>>> >>>> ------------------------------------------------------------------------------ >>>> Live Security Virtual Conference >>>> Exclusive live event will cover all the ways today's security and >>>> threat landscape has changed and how IT managers can respond. Discussions >>>> will include endpoint security, mobile security and the latest in malware >>>> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >>>> _______________________________________________ >>>> PyMOL-users mailing list (PyM...@li...) >>>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>>> Archives: http://www.mail-archive.com/pym...@li... >>> >>> >>> >>> -- >>> Jason Vertrees, PhD >>> PyMOL Product Manager >>> Schrödinger, LLC >>> >>> (e) Jas...@sc... >>> (o) +1 (603) 374-7120 > > > > -- > Jason Vertrees, PhD > PyMOL Product Manager > Schrödinger, LLC > > (e) Jas...@sc... > (o) +1 (603) 374-7120 |
From: Jason V. <jas...@sc...> - 2012-05-06 15:12:56
|
Marius (and Boris), I haven't had any issues compiling from source, but some others seem to be having problems. In a few hours I begin my trip to Europe. I'll be out of the office for two weeks. If this isn't solved by then, we'll take a look at it. Cheers, -- Jason On Sun, May 6, 2012 at 10:10 AM, Marius Retegan <mar...@gm...> wrote: > Hi Jason, > > I'll do that. The problem is that the new open-source branch does not > compile with the vmd plugins. I've open a bug on the bug tracker on > SourceForge. > > Thank you, > Marius > > On Sun, May 6, 2012 at 3:31 PM, Jason Vertrees > <jas...@sc...> wrote: >> Hi Marius, >> >> Just use the new open-source code in PyMOL. The plugin system is now >> built-in. If you try to integrate the plugin code yourself, it might >> take a little work. >> >> Cheers, >> >> -- Jason >> >> On Sat, May 5, 2012 at 4:24 PM, Marius Retegan >> <mar...@gm...> wrote: >>> Maybe I'm doing something wrong... >>> I started by cloning the code from github, set the PYTHONPATH variable >>> to it, but it does not seem to be taken into account by Pymol. >>> >>> python >>> import sys >>> print sys.path >>> python end >>> >>> ['', '/Applications/MacPyMOL.app/pymol/modules', >>> '/Applications/MacPyMOL.app/Contents/MacOS', >>> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/setuptools-0.6c11-py2.7.egg', >>> '/Applications/MacPyMOL.app/pymol/modules', >>> '/Applications/MacPyMOL.app/pymol/ext/lib/python27.zip', >>> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7', >>> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/plat-darwin', >>> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/plat-mac', >>> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/plat-mac/lib-scriptpackages', >>> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/lib-tk', >>> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/lib-old', >>> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/lib-dynload', >>> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages', >>> '/Applications/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/PIL', >>> '/Applications/MacPyMOL.app/pymol/freemol/libpy'] >>> >>> >>> On Sat, May 5, 2012 at 7:00 PM, Jason Vertrees >>> <jas...@sc...> wrote: >>>> Hi Marius, >>>> >>>> The new plugin code was built and tested on Mac OS X before release. >>>> It worked just as well as on other platforms. >>>> >>>> Please let us know if you discover any issues. >>>> >>>> Cheers, >>>> >>>> -- Jason >>>> >>>> On Sat, May 5, 2012 at 4:49 AM, Marius Retegan >>>> <mar...@gm...> wrote: >>>>> Hello, >>>>> >>>>> Was the plugin manager tested with the incentive builds on mac osx? Is >>>>> the setup procedure similar? >>>>> >>>>> Thank you >>>>> Marius >>>>> >>>>> On Wed, May 2, 2012 at 3:43 PM, Michael Banck <mb...@de...> wrote: >>>>>> Hi, >>>>>> >>>>>> On Wed, May 02, 2012 at 09:39:59AM -0400, Jason Vertrees wrote: >>>>>>> Thanks for this feedback. Since the inception the Script Library on >>>>>>> the PyMOLWiki the policy is that all deposited scripts are >>>>>>> open-source: http://pymolwiki.org/index.php/Category_talk:Script_Library#Policy. >>>>>>> This link is "Policy" from the PyMOLWiki Scripts page. >>>>>> >>>>>> Awesome! (also about the meta-information in the plugin manager) >>>>>> >>>>>> >>>>>> Michael >>>>>> >>>>>> ------------------------------------------------------------------------------ >>>>>> Live Security Virtual Conference >>>>>> Exclusive live event will cover all the ways today's security and >>>>>> threat landscape has changed and how IT managers can respond. Discussions >>>>>> will include endpoint security, mobile security and the latest in malware >>>>>> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >>>>>> _______________________________________________ >>>>>> PyMOL-users mailing list (PyM...@li...) >>>>>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>>>>> Archives: http://www.mail-archive.com/pym...@li... >>>>> >>>>> ------------------------------------------------------------------------------ >>>>> Live Security Virtual Conference >>>>> Exclusive live event will cover all the ways today's security and >>>>> threat landscape has changed and how IT managers can respond. Discussions >>>>> will include endpoint security, mobile security and the latest in malware >>>>> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >>>>> _______________________________________________ >>>>> PyMOL-users mailing list (PyM...@li...) >>>>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>>>> Archives: http://www.mail-archive.com/pym...@li... >>>> >>>> >>>> >>>> -- >>>> Jason Vertrees, PhD >>>> PyMOL Product Manager >>>> Schrödinger, LLC >>>> >>>> (e) Jas...@sc... >>>> (o) +1 (603) 374-7120 >> >> >> >> -- >> Jason Vertrees, PhD >> PyMOL Product Manager >> Schrödinger, LLC >> >> (e) Jas...@sc... >> (o) +1 (603) 374-7120 -- Jason Vertrees, PhD PyMOL Product Manager Schrödinger, LLC (e) Jas...@sc... (o) +1 (603) 374-7120 |