From: Anjana R. <anj...@gm...> - 2011-11-22 17:27:25
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Hello, I would like to know how to create these pictures. I have looked at all available pymol tutorials online but am not able to find anything that would help me create these pictures. Thank you very much for your help. Here are the links to the pictures: https://lh3.googleusercontent.com/-0TJhgxEIAIM/TsvUewyNAoI/AAAAAAAAAic/kFcIE2shs8A/s830/pi%2Bstacking.jpg https://lh4.googleusercontent.com/-0TJhgxEIAIM/TsvUewyNAoI/AAAAAAAAAic/kFcIE2shs8A/w200-h168-k/pi%2Bstacking.jpg https://lh5.googleusercontent.com/-Rbz_lQp9aFM/TsvUjPPWLDI/AAAAAAAAAik/qAyuQmmQhIU/s912/pic3.png |
From: Anjana R. <anj...@gm...> - 2011-11-22 17:30:09
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Hello, I would like to know how to create these pictures. I have looked at all available pymol tutorials online but am not able to find anything that would help me create these pictures. Thank you very much for your help. Here are the links to the pictures: https://lh3.googleusercontent.com/-0TJhgxEIAIM/TsvUewyNAoI/AAAAAAAAAic/kFcIE2shs8A/s830/pi%2Bstacking.jpg https://lh5.googleusercontent.com/-2z8uuyOW4u0/TsvMChg_8QI/AAAAAAAAAiA/PEDdy3u8-jk/s493/pic1.png https://lh5.googleusercontent.com/-Rbz_lQp9aFM/TsvUjPPWLDI/AAAAAAAAAik/qAyuQmmQhIU/s912/pic3.png |
From: Jason V. <jas...@sc...> - 2011-11-23 03:44:24
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Hi Anjana, > https://lh3.googleusercontent.com/-0TJhgxEIAIM/TsvUewyNAoI/AAAAAAAAAic/kFcIE2shs8A/s830/pi%2Bstacking.jpg This isn't difficult. You need the structure, then you have to select the ladder and show it as ball-and-stick. Next, show the bases as sticks and you're set. Start here, http://pymolwiki.org, if you need more help. > https://lh5.googleusercontent.com/-2z8uuyOW4u0/TsvMChg_8QI/AAAAAAAAAiA/PEDdy3u8-jk/s493/pic1.png There are many links out there, just try googling for "pymol electrostatic surface": * http://www.pymolwiki.org/index.php/APBS * http://kpwu.wordpress.com/tag/electrostatic/ * etc. > https://lh5.googleusercontent.com/-Rbz_lQp9aFM/TsvUjPPWLDI/AAAAAAAAAik/qAyuQmmQhIU/s912/pic3.png Making this picture in PyMOL would not be easy. For this you'd be best off with a 2D program. Cheers, -- Jason -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) Jas...@sc... (o) +1 (603) 374-7120 |