From: Abhinav K. <abh...@sl...> - 2013-01-09 23:40:51
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Hi, I recently upgraded my desktop to Ubuntu 12.10. When I load a pdb in pymol, it comes up with line rendering as usual, but if I try to do a stick or ribbon rendering, it does not do it. In fact the stick operation hides the residue. These are the graphics specifics written by pymol. OpenGL graphics engine: GL_VENDOR: nouveau GL_RENDERER: Gallium 0.4 on NV84 GL_VERSION: 3.0 Mesa 9.0 Detected 4 CPU cores. Enabled multithreaded rendering. Any help please. -- Thanks, Abhinav JCSG@SSRL, SLAC (650) 926-2992 |
From: Jason V. <jas...@sc...> - 2013-01-10 14:59:56
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Hi Abhinav, Does this setting help: set cylinder_shader_ff_workaround, 1 If not, can you please send me a screenshot showing the problem? Cheers, -- Jason On Wed, Jan 9, 2013 at 5:40 PM, Abhinav Kumar <abh...@sl...> wrote: > Hi, > I recently upgraded my desktop to Ubuntu 12.10. > > When I load a pdb in pymol, it comes up with line rendering as usual, but if > I try to do a stick or ribbon rendering, it does not do it. In fact the > stick operation hides the residue. > > These are the graphics specifics written by pymol. > OpenGL graphics engine: > GL_VENDOR: nouveau > GL_RENDERER: Gallium 0.4 on NV84 > GL_VERSION: 3.0 Mesa 9.0 > Detected 4 CPU cores. Enabled multithreaded rendering. > > Any help please. > > -- > Thanks, > Abhinav > > JCSG@SSRL, SLAC > (650) 926-2992 > > > ------------------------------------------------------------------------------ > Master Java SE, Java EE, Eclipse, Spring, Hibernate, JavaScript, jQuery > and much more. Keep your Java skills current with LearnJavaNow - > 200+ hours of step-by-step video tutorials by Java experts. > SALE $49.99 this month only -- learn more at: > http://p.sf.net/sfu/learnmore_122612 > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... -- Jason Vertrees, PhD Director of Core Modeling Product Management Schrödinger, Inc. (e) Jas...@sc... (o) +1 (603) 374-7120 |
From: Abhinav K. <abh...@sl...> - 2013-01-11 18:57:48
|
Hi Jason, I had some issues with the graphics drivers. It is fixed now and I can see the rendering just fine, without having to issue the command you sent me. Thanks very much for the fix though. Thanks, Abhinav JCSG@SSRL, SLAC (650) 926-2992 On 01/10/2013 06:59 AM, Jason Vertrees wrote: > Hi Abhinav, > > Does this setting help: > > set cylinder_shader_ff_workaround, 1 > > If not, can you please send me a screenshot showing the problem? > > Cheers, > > -- Jason > > > On Wed, Jan 9, 2013 at 5:40 PM, Abhinav Kumar > <abh...@sl...> wrote: >> Hi, >> I recently upgraded my desktop to Ubuntu 12.10. >> >> When I load a pdb in pymol, it comes up with line rendering as usual, but if >> I try to do a stick or ribbon rendering, it does not do it. In fact the >> stick operation hides the residue. >> >> These are the graphics specifics written by pymol. >> OpenGL graphics engine: >> GL_VENDOR: nouveau >> GL_RENDERER: Gallium 0.4 on NV84 >> GL_VERSION: 3.0 Mesa 9.0 >> Detected 4 CPU cores. Enabled multithreaded rendering. >> >> Any help please. >> >> -- >> Thanks, >> Abhinav >> >> JCSG@SSRL, SLAC >> (650) 926-2992 >> >> >> ------------------------------------------------------------------------------ >> Master Java SE, Java EE, Eclipse, Spring, Hibernate, JavaScript, jQuery >> and much more. Keep your Java skills current with LearnJavaNow - >> 200+ hours of step-by-step video tutorials by Java experts. >> SALE $49.99 this month only -- learn more at: >> http://p.sf.net/sfu/learnmore_122612 >> _______________________________________________ >> PyMOL-users mailing list (PyM...@li...) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pym...@li... > > > -- > Jason Vertrees, PhD > Director of Core Modeling Product Management > Schrödinger, Inc. > > (e) Jas...@sc... > (o) +1 (603) 374-7120 |