From: Christoffer N. <ch...@gm...> - 2013-10-26 10:04:27
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Dear PyMOL connoisseurs, I’m writing a small package for visualizing hundreds of designed proteins. In this quest I need a function which for-objects-in-a-selection asks the user for comments and then save the object name together with the comment in a textfile. I would like to use the same interface for user interaction as the one the rename function uses. I tried reading the wizard for rename, but to no use. Hope you can help. An additional question: When double-clicking to open a pdb file, I need pymol to run .pymolrc before it uses the cmd.load to load the double-clicked pdb file. Is there any way to do this? Thanks, Chris |
From: Christoffer N. <ch...@gm...> - 2013-10-29 10:50:43
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Hi All, How can I, from the command line, get information on whether a object is enabled or disabled? I need this to flip through thousands of designed proteins — and with this many proteins, mouse-clicking to enable/disable them becomes a bit cumbersome. Thanks, Chris |
From: Jason V. <jas...@sc...> - 2013-10-29 16:48:18
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Hi Chris, if objName in cmd.get_names(enabled_only=1): print "objName is enabled" Cheers, -- Jason On Tue, Oct 29, 2013 at 5:50 AM, Christoffer Norn <ch...@gm...> wrote: > Hi All, > How can I, from the command line, get information on whether a object is enabled or disabled? I need this to flip through thousands of designed proteins — and with this many proteins, mouse-clicking to enable/disable them becomes a bit cumbersome. > Thanks, > Chris > ------------------------------------------------------------------------------ > Android is increasing in popularity, but the open development platform that > developers love is also attractive to malware creators. Download this white > paper to learn more about secure code signing practices that can help keep > Android apps secure. > http://pubads.g.doubleclick.net/gampad/clk?id=65839951&iu=/4140/ostg.clktrk > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... -- Jason Vertrees, PhD Director of Core Modeling Products Schrödinger, Inc. (e) Jas...@sc... (o) +1 (603) 374-7120 |
From: Christoffer N. <ch...@gm...> - 2013-10-29 19:09:14
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Hi Jason and Takanori, This was exactly what I was looking for. Thanks for your help. Chris > On 29/10/2013, at 18.48, Jason Vertrees <jas...@sc...> wrote: > > Hi Chris, > > if objName in cmd.get_names(enabled_only=1): > print "objName is enabled" > > Cheers, > > -- Jason > >> On Tue, Oct 29, 2013 at 5:50 AM, Christoffer Norn <ch...@gm...> wrote: >> Hi All, >> How can I, from the command line, get information on whether a object is enabled or disabled? I need this to flip through thousands of designed proteins — and with this many proteins, mouse-clicking to enable/disable them becomes a bit cumbersome. >> Thanks, >> Chris >> ------------------------------------------------------------------------------ >> Android is increasing in popularity, but the open development platform that >> developers love is also attractive to malware creators. Download this white >> paper to learn more about secure code signing practices that can help keep >> Android apps secure. >> http://pubads.g.doubleclick.net/gampad/clk?id=65839951&iu=/4140/ostg.clktrk >> _______________________________________________ >> PyMOL-users mailing list (PyM...@li...) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pym...@li... > > > > -- > Jason Vertrees, PhD > Director of Core Modeling Products > Schrödinger, Inc. > > (e) Jas...@sc... > (o) +1 (603) 374-7120 |