From: Francois B. <ber...@ri...> - 2011-03-02 08:05:09
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Hello, If I use "save myscene.obj" and I was looking at the surface representation of a molecule, does the file contains only the external surface of the protein, or are the internal cavities also included? Thanks, F. |
From: Francois B. <ber...@ri...> - 2011-03-02 11:01:27
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Hello, If I use "save myscene.obj" and I was looking at the surface representation of a molecule, does the file contains only the external surface of the protein, or are the internal cavities also included? Thanks, F. |
From: Jason V. <jas...@sc...> - 2011-03-08 03:22:44
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Hi Francois, Woops--sorry for the delay. I think only the outside vertices are sent. To get the inside, try set surface_cavity_mode, 2 before surfacing and exporting. You can also set that to '3' to include pockets as well as cavities. Cheers, -- Jason On Wed, Mar 2, 2011 at 3:04 AM, Francois Berenger <ber...@ri...> wrote: > Hello, > > If I use "save myscene.obj" and I was looking at the surface > representation of a molecule, does the file contains only the external > surface of the protein, or are the internal cavities also included? > > Thanks, > F. > > ------------------------------------------------------------------------------ > Free Software Download: Index, Search & Analyze Logs and other IT data in > Real-Time with Splunk. Collect, index and harness all the fast moving IT data > generated by your applications, servers and devices whether physical, virtual > or in the cloud. Deliver compliance at lower cost and gain new business > insights. http://p.sf.net/sfu/splunk-dev2dev > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) Jas...@sc... (o) +1 (603) 374-7120 |