From: Horacio S. <hor...@in...> - 2008-09-21 18:04:01
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Hi, Given two very similar pdb structures, do you know if it is possible to colour them in relationship with the RMSD between the 2 structures ? I mean that for instance the backbone is practically the same in both proteines, so it gets some same color in both, but for some chains which are different, the colors start to diferentiate in relation to the RMSD. Thanks in advance Horacio |
From: Chavas L. <pym...@gm...> - 2008-09-22 01:40:37
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Dear Horacio -- On 21 Sep 2008, at 18:38, Horacio Sánchez wrote: > Given two very similar pdb structures, do you know if it is > possible to > colour them in relationship with the RMSD between the 2 structures ? I guess it might be possible to do it by using the same trick as for the ConSurf representation. If you can get the values of rmsd for each residue, and replace the B-fac column by those values, you can, I believe, have such a representation... HTH Kind regards. -- Leo -- ------------------------------------------------------------ Chavas Leonard, Ph.D. @ home Research Associate Marie Curie Actions Fellow ------------------------------------------------------------ Faculty of Life Sciences The University of Manchester The Michael Smith Building Oxford Road Manchester Lancashire M13 9PT ------------------------------------------------------------ Tel: +44(0)161-275-1586 e-mail: Leo...@ma... http://personalpages.manchester.ac.uk/staff/leonard.chavas/ |