From: Chris R. <chr...@va...> - 2002-05-10 15:47:16
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Hi, I am making some stereo images and would like to put in some labels that will move with the model. When I use the "label" command, the labels are okay but they disappear with ray tracing. Is there any way around this, other than adding in the labels in an image editing program? Thanks, Chris |
From: Jose A. <ja...@gr...> - 2004-02-11 21:02:57
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Dear all: What do I need to do avoid losing the labels when I ray trace? Thank you again Jose |
From: Warren D. <wa...@de...> - 2004-02-11 23:13:45
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Jose, Thanks to some recent and much appreciated development assistance from PyMOL user, this is something I hope we can deliver in the next release... For now, save your ray-traced images as PNG files and then annotate manually in PowerPoint, Photoshop, or Keynote. Sorry for the inconvenience. Cheers, Warren > -----Original Message----- > From: pym...@li... > [mailto:pym...@li...] On Behalf Of > Jose Avalos > Sent: Wednesday, February 11, 2004 1:01 PM > To: Warren DeLano > Cc: pym...@li... > Subject: [PyMOL] labels > > > Dear all: > > What do I need to do avoid losing the labels when I ray trace? > > Thank you again > > Jose > > > > ------------------------------------------------------- > SF.Net is sponsored by: Speed Start Your Linux Apps Now. > Build and deploy apps & Web services for Linux with a free > DVD software kit from IBM. Click Now! > http://ads.osdn.com/?ad_id=1356&alloc_id=3438&op=click > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users > |
From: Mads G. <m.g...@du...> - 2004-04-05 10:26:37
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I have just installed the new release of PyMol and was particularly pleased that labels can now be rendered. Then it occured to me that I actually don't know how to label a residue Tyr84 (or whatever) and have the label positioned next to the residue. Any hints would be appreciated. Also, am I the only one who can't access the mail-list archives? Cheers, Mads Gabrielsen |
From: Sabine S. <pa...@no...> - 2006-03-22 12:23:21
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Hi everyone, I got a odd problem with labeling: I used: label resi 196 and name c, "%s %s" % (resn, resi) set label_color, black set label_font_id, 4 To shift the label I "shift-middle-click-drag (in 3-Button-editing-mode)" but I get a duplication of the label?=20 When I opened another pse-file there was no duplication or if I said "hide = label" it only removed the one it hasn't moved.=20 But in the case with the more complicated stuff it either showed them doubl= e or none? What am I doing wrong? thanks=20 Sabine This message has been checked for viruses but the contents of an attachment may still contain software viruses, which could damage your computer system: you are advised to perform your own checks. Email communications with the University of Nottingham may be monitored as permitted by UK legislation. |
From: Robert C. <rl...@k2...> - 2002-05-10 15:58:35
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* Chris Rife <chr...@va...> [2002-05-10 10:47] wrote: > I am making some stereo images and would like to put in some labels that > will move with the model. When I use the "label" command, the labels are > okay but they disappear with ray tracing. Is there any way around this, > other than adding in the labels in an image editing program? You can use the cgo text (line or cylinder versions) as I mentioned in my reply about drawing the xyz axes, but be warned that the labels rotate with you molecule, so getting them oriented perpendicular to the view may be a pain (unless there is something I've missed). Warren's example from a previous reply of his: # draw text using cgo from pymol import cmd from pymol.cgo import * from pymol.vfont import plain cgo = [] axes = [[2.0,0.0,0.0],[0.0,2.0,0.0],[0.0,0.0,2.0]] pos = [0.0,0.0,0.0] wire_text(cgo,plain,pos,'Hello World',axes) pos = [0.0,-3.0,0.0] cyl_text(cgo,plain,pos,'Hello Universe',0.10,axes=axes) cmd.set("cgo_line_radius",0.03) cmd.load_cgo(cgo,'txt') cmd.zoom("all",2.0) Cheers, Robert -- Robert L. Campbell, Ph.D. http://biophysics.med.jhmi.edu/rlc rl...@k2... phone: 410-614-6313 Research Specialist/X-ray Facility Manager HHMI/Dept. of Biophysics & Biophysical Chem., The Johns Hopkins University PGP Fingerprint: 9B49 3D3F A489 05DC B35C 8E33 F238 A8F5 F635 C0E2 |