From: David M. <dav...@fu...> - 2007-10-04 10:27:33
|
Dear PyMol Users, I am developing some programs in python. In one of them, I would need to use some PyMol funcionalities. However, I keep getting errors that I'm not able to solve. I've checked the __main__.py file instructions on the header, it doesn't work either. I'm using the following : Debian Sarge with : - Linux kernel 2.6. - IA-32 Intel processor. - Python 2.3.5 - pymol-0.99rc6 For instance : [root@machine root]# python Python 2.3.5 (#2, Oct 16 2006, 19:19:48) [GCC 3.3.5 (Debian 1:3.3.5-13)] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> import sys >>> sys.path.append('/opt/soft/pymol/modules') >>> from pymol import cmd Traceback (most recent call last): File "<stdin>", line 1, in ? File "pymol.py", line 4, in ? pymol.finish_launching() AttributeError: 'module' object has no attribute 'finish_launching' Does anybody know what's going on ? Thanks in advance David McGiven |
From: DeLano S. <de...@de...> - 2007-10-04 18:41:11
|
David, Not sure, but you may need a vanilla "import pymol" before "from pymol import cmd". -- DeLano Scientific LLC Subscriber Support Services mailto:de...@de... "Not yet a PyMOL Subscriber, but want to support the project? Email sa...@de... to quote your lab, school, or employer. Thank you for sponsoring this open-source endeavor!" -WLD > -----Original Message----- > From: pym...@li... > [mailto:pym...@li...] On Behalf > Of David McGiven > Sent: Thursday, October 04, 2007 3:29 AM > To: pym...@li... > Subject: [PyMOL] Problems importing pymol functionality under > a pythonscript. > > > Dear PyMol Users, > > I am developing some programs in python. In one of them, I > would need to use some PyMol funcionalities. > > However, I keep getting errors that I'm not able to solve. > I've checked the __main__.py file instructions on the header, > it doesn't work either. > > I'm using the following : > > Debian Sarge with : > - Linux kernel 2.6. > - IA-32 Intel processor. > - Python 2.3.5 > - pymol-0.99rc6 > > For instance : > > [root@machine root]# python > Python 2.3.5 (#2, Oct 16 2006, 19:19:48) [GCC 3.3.5 (Debian > 1:3.3.5-13)] on linux2 Type "help", "copyright", "credits" or > "license" for more information. > >>> import sys > >>> sys.path.append('/opt/soft/pymol/modules') > >>> from pymol import cmd > Traceback (most recent call last): > File "<stdin>", line 1, in ? > File "pymol.py", line 4, in ? > pymol.finish_launching() > AttributeError: 'module' object has no attribute 'finish_launching' > > > Does anybody know what's going on ? > > Thanks in advance > > David McGiven > > -------------------------------------------------------------- > ----------- > This SF.net email is sponsored by: Splunk Inc. > Still grepping through log files to find problems? Stop. > Now Search log events and configuration files using AJAX and > a browser. > Download your FREE copy of Splunk now >> > http://get.splunk.com/ _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users |
From: David M. <dav...@fu...> - 2007-10-05 10:49:49
|
Dear Sir, Thanks for your prompt reply. However, that didn't help either. [root@machine root]# python Python 2.3.5 (#2, Oct 16 2006, 19:19:48) [GCC 3.3.5 (Debian 1:3.3.5-13)] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> import sys >>> sys.path.append('/opt/soft/pymol/modules') >>> import pymol Traceback (most recent call last): File "<stdin>", line 1, in ? File "pymol.py", line 4, in ? pymol.finish_launching() AttributeError: 'module' object has no attribute 'finish_launching' >>> from pymol import cmd Traceback (most recent call last): File "<stdin>", line 1, in ? ImportError: cannot import name cmd >>> Does anybody else know what might be the problem ? Thanks in advance David On Thu, 4 Oct 2007 11:41:06 -0700 "DeLano Scientific" <de...@de...> wrote: > David, > > Not sure, but you may need a vanilla "import pymol" before "from pymol > import cmd". > > -- > DeLano Scientific LLC > Subscriber Support Services > mailto:de...@de... > > "Not yet a PyMOL Subscriber, but want to support the project? Email > sa...@de... to quote your lab, school, or employer. Thank you > for > sponsoring this open-source endeavor!" -WLD > > > > -----Original Message----- > > From: pym...@li... > > [mailto:pym...@li...] On Behalf > > Of David McGiven > > Sent: Thursday, October 04, 2007 3:29 AM > > To: pym...@li... > > Subject: [PyMOL] Problems importing pymol functionality under > > a pythonscript. > > > > > > Dear PyMol Users, > > > > I am developing some programs in python. In one of them, I > > would need to use some PyMol funcionalities. > > > > However, I keep getting errors that I'm not able to solve. > > I've checked the __main__.py file instructions on the header, > > it doesn't work either. > > > > I'm using the following : > > > > Debian Sarge with : > > - Linux kernel 2.6. > > - IA-32 Intel processor. > > - Python 2.3.5 > > - pymol-0.99rc6 > > > > For instance : > > > > [root@machine root]# python > > Python 2.3.5 (#2, Oct 16 2006, 19:19:48) [GCC 3.3.5 (Debian > > 1:3.3.5-13)] on linux2 Type "help", "copyright", "credits" or > > "license" for more information. > > >>> import sys > > >>> sys.path.append('/opt/soft/pymol/modules') > > >>> from pymol import cmd > > Traceback (most recent call last): > > File "<stdin>", line 1, in ? > > File "pymol.py", line 4, in ? > > pymol.finish_launching() > > AttributeError: 'module' object has no attribute 'finish_launching' > > > > > > Does anybody know what's going on ? > > > > Thanks in advance > > > > David McGiven > > > > -------------------------------------------------------------- > > ----------- > > This SF.net email is sponsored by: Splunk Inc. > > Still grepping through log files to find problems? Stop. > > Now Search log events and configuration files using AJAX and > > a browser. > > Download your FREE copy of Splunk now >> > > http://get.splunk.com/ > > _______________________________________________ > > PyMOL-users mailing list > > PyM...@li... > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > |