A quite feasible cause for this situation is due to the usage of unsorted BAM files in processes like Variants Detector among others. For all functionalities in NGSEP that requires a BAM file, this must be sorted. Currently the Map reads function can generate the sorted BAM file directly, or you can sort your unsorted BAM file using the Sort Alignment function.
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A quite feasible cause for this situation is due to the usage of unsorted BAM files in processes like Variants Detector among others. For all functionalities in NGSEP that requires a BAM file, this must be sorted. Currently the Map reads function can generate the sorted BAM file directly, or you can sort your unsorted BAM file using the Sort Alignment function.