Currently some functionalities are presenting problems when output files names or directories contain white spaces. This could throw many kinds of exceptions that you can verify in the log file.
For example using the map read option:
File #1: /home/directory05/workspace/Sample71 SupPar/Samplen71_1.fq
File #2: /home/ directory05/workspace/Sample77SupPar/Samplen71 2.fq
Exception: Extra parameter(s) specified: "SupPar/Samplen71_1.fq", "2.fq"
In this case both parameters are wrong.
For File 1: Sample71(space)SupPar
For File 2: Samplen71(space)2.fq
We are working to solve this problem, for now avoid to use spaces in your output files names and directories.
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
We adjusted the mapping program to be friendly with white spaces and we released the changes in the latest version (0.1.4). Please let us know if you experience any further problems with white spaces.
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
Currently some functionalities are presenting problems when output files names or directories contain white spaces. This could throw many kinds of exceptions that you can verify in the log file.
For example using the map read option:
File #1: /home/directory05/workspace/Sample71 SupPar/Samplen71_1.fq
File #2: /home/ directory05/workspace/Sample77SupPar/Samplen71 2.fq
Exception: Extra parameter(s) specified: "SupPar/Samplen71_1.fq", "2.fq"
In this case both parameters are wrong.
For File 1: Sample71(space)SupPar
For File 2: Samplen71(space)2.fq
We are working to solve this problem, for now avoid to use spaces in your output files names and directories.
We adjusted the mapping program to be friendly with white spaces and we released the changes in the latest version (0.1.4). Please let us know if you experience any further problems with white spaces.