From: Jason P. <jmo...@pe...> - 2008-04-29 00:40:38
|
I am getting a hard Firefox crash (the browser locks up) in WinXP. My page has 2 jmol applets. They are both declared within the html (using separate <script>jmolApplet(...)</script> chunks) In the Java Console, I see this error (full error text at the bottom of this email): java.lang.RuntimeException: Error while creating embedded frame at sun.plugin.viewer.WNetscapePluginObject.createFrame(Unknown Source) at sun.plugin.viewer.WNetscapePluginObject.setWindow(Unknown Source) It seems that if this error hits, jmol still tries to perform operations on the applet, and perhaps it is just not there? That's pure speculation though. Oh, and of course the crash is very finicky. If I've successfully loaded jmol on another page visit, or load my applets at different points in the page, the crash does not occur. Currently, I can reproduce the crash every time by going to ( http://clavius.bc.edu/~pappy/clotelab/lm/getResults.php?id=5146836237250173881<http://clavius.bc.edu/%7Epappy/clotelab/lm/getResults.php?id=5146836237250173881> ... click 'Go') immediately after starting Firefox, whereas my neighbor can load the page just fine. In fact, if I simply take out some extraneous <div>s from my page, the error goes away (in this simplified version of the page... that's not a usable "fix") Aaaaaaargh! Any help would be greatly appreciated. Jason Persampieri Programmer Boston College - Bioinformatics (full error text with tracing info follows) Java Plug-in 1.6.0_05 Using JRE version 1.6.0_05 Java HotSpot(TM) Client VM User home directory = C:\Documents and Settings\Persampi network: Loading user-defined proxy configuration ... network: Done. network: Loading proxy configuration from Netscape Navigator ... network: Error reading registry file: C:\Documents and Settings\Persampi\Application Data\Mozilla\registry.dat network: Done. network: Loading browser proxy configuration ... network: Done. network: Proxy Configuration: Browser Proxy Configuration ---------------------------------------------------- c: clear console window f: finalize objects on finalization queue g: garbage collect h: display this help message l: dump classloader list m: print memory usage o: trigger logging p: reload proxy configuration q: hide console r: reload policy configuration s: dump system and deployment properties t: dump thread list v: dump thread stack x: clear classloader cache 0-5: set trace level to <n> ---------------------------------------------------- basic: Referencing classloader: sun.plugin.ClassLoaderInfo@922804, refcount=1 basic: Added progress listener: sun.plugin.util.GrayBoxPainter@1908ca1 basic: Loading applet ... basic: Initializing applet ... basic: Starting applet ... basic: completed perf rollup network: Cache entry found [url: http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar>, version: null] network: Connecting http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar>with proxy=DIRECT network: ResponseCode for http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar>: 304 network: Encoding for http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar>: null network: Disconnect connection to http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar> network: No certificate info for unsigned JAR file: http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar> network: Cache entry found [url: http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Main.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Main.jar>, version: null] network: Connecting http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Main.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Main.jar>with proxy=DIRECT network: ResponseCode for http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Main.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Main.jar>: 304 network: Encoding for http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Main.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Main.jar>: null network: Disconnect connection to http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Main.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Main.jar> network: No certificate info for unsigned JAR file: http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Main.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Main.jar> network: Cache entry found [url: http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Core.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Core.jar>, version: null] network: Connecting http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Core.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Core.jar>with proxy=DIRECT liveconnect: JavaScript: calling Java system code liveconnect: JavaScript: UniversalJavaPermission enabled liveconnect: JavaScript: calling Java system code liveconnect: JavaScript: UniversalJavaPermission enabled network: ResponseCode for http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Core.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Core.jar>: 304 liveconnect: JavaScript: calling Java system code liveconnect: JavaScript: UniversalJavaPermission enabled network: Encoding for http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Core.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Core.jar>: null network: Disconnect connection to http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Core.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Core.jar> liveconnect: JavaScript: calling Java system code liveconnect: JavaScript: UniversalJavaPermission enabled liveconnect: JavaScript: calling Java system code liveconnect: JavaScript: UniversalJavaPermission enabled liveconnect: JavaScript: calling Java system code liveconnect: JavaScript: UniversalJavaPermission enabled liveconnect: JavaScript: calling Java system code liveconnect: JavaScript: UniversalJavaPermission enabled network: No certificate info for unsigned JAR file: http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Core.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Core.jar> ClassPreloader - javax.vecmath.Vector3f+ ClassPreloader - javax.vecmath.Point3f+ ClassPreloader - javax.vecmath.Matrix3f+ network: Cache entry found [url: http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Jars.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Jars.jar>, version: null] network: Connecting http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Jars.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Jars.jar>with proxy=DIRECT network: ResponseCode for http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Jars.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Jars.jar>: 304 network: Encoding for http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Jars.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Jars.jar>: null network: Disconnect connection to http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Jars.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Jars.jar> network: No certificate info for unsigned JAR file: http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Jars.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Jars.jar> ClassPreloader - javax.vecmath.Point3i+ ClassPreloader - org.jmol.g3d.Graphics3D ClassPreloader - org.jmol.g3d.Sphere3D ClassPreloader - org.jmol.g3d.Line3D ClassPreloader - org.jmol.g3d.Cylinder3D urlImage=jar: http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar!/jmol75x29x8.gif<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar%21/jmol75x29x8.gif> ClassPreloader - org.jmol.g3d.Colix3D Init jmol language=en_US Jmol applet jmolAppletoriginal AppletRegistry.checkIn(jmolAppletoriginal) network: Cache entry found [url: http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar>, version: null] network: No certificate info for unsigned JAR file: http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar> ClassPreloader - org.jmol.g3d.Shade3D ClassPreloader - org.jmol.adapter.smarter.SmarterJmolAdapter ClassPreloader - org.jmol.adapter.smarter.Atom ClassPreloader - org.jmol.adapter.smarter.Bond ClassPreloader - org.jmol.adapter.smarter.AtomSetCollection ClassPreloader - org.jmol.adapter.smarter.AtomSetCollectionReader network: Cache entry found [url: http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar>, version: null] network: Connecting http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar>with proxy=DIRECT network: ResponseCode for http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar>: 304 network: Encoding for http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar>: null network: Disconnect connection to http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar> network: No certificate info for unsigned JAR file: http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar> ClassPreloader - org.jmol.adapter.smarter.Resolver ClassPreloader - org.jmol.popup.JmolPopup network: Cache entry found [url: http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Popup.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Popup.jar>, version: null] network: Connecting http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Popup.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Popup.jar>with proxy=DIRECT network: ResponseCode for http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Popup.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Popup.jar>: 304 network: Encoding for http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Popup.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Popup.jar>: null network: Disconnect connection to http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Popup.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Popup.jar> network: No certificate info for unsigned JAR file: http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Popup.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Popup.jar> network: Cache entry found [url: http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar>, version: null] network: No certificate info for unsigned JAR file: http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar<http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar> viewer.setIntProperty(_version,1103006) - integer variable defined (C) 2007 Jmol Development Jmol Version 11.3.6 2007-07-23 06:14 java.vendor:Sun Microsystems Inc. java.version:1.6.0_05 os.name:Windows XP memory:2.3/5.2 appletId:jmolAppletoriginal appletDocumentBase= http://clavius/~pappy/clotelab/lm/getResults.php?id=5146836237250173881&jmol=1<http://clavius/%7Epappy/clotelab/lm/getResults.php?id=5146836237250173881&jmol=1> liveconnect: the url of the applet is http://clavius and the permission is = false java.lang.RuntimeException: Error while creating embedded frame at sun.plugin.viewer.WNetscapePluginObject.createFrame(Unknown Source) at sun.plugin.viewer.WNetscapePluginObject.setWindow(Unknown Source) liveconnect: JSObject::getMember: name=document liveconnect: the url of the applet is http://clavius and the permission is = false liveconnect: JavaScript: calling Java system code liveconnect: JavaScript: default security policy = http://clavius liveconnect: JavaScript: calling Java system code liveconnect: JavaScript: default security policy = http://clavius liveconnect: JavaScript: calling Java system code liveconnect: JavaScript: default security policy = http://clavius liveconnect: JavaScript: calling Java system code liveconnect: JavaScript: default security policy = http://clavius liveconnect: JavaScript: calling Java system code liveconnect: JavaScript: default security policy = http://clavius |
From: Bob H. <ha...@st...> - 2008-04-29 22:45:35
|
Not Found The requested URL /~pappy/clotelab/lm/getResults.php was not found on this server. ------------------------------------------------------------------------ Apache/2.0.54 Server at www.clavius.com Port 80 Jason Persampieri wrote: > this is it. It has been 're-crufted' (that is, it's the full version > of the page again) :) > > http://clavius/~pappy/clotelab/lm/getResults.php?id=5146836237250173881&jmol=1 > <http://clavius/%7Epappy/clotelab/lm/getResults.php?id=5146836237250173881&jmol=1> > > |
From: Jason P. <jmo...@pe...> - 2008-04-29 23:09:39
|
doh. I don't normally fully qualify the domain name. Here is the full url. http://clavius.bc.edu/~pappy/clotelab/lm/getResults.php?id=5146836237250173881 I am currently in the process of trying to rewrite this mess in a much more organized manner. That said, it still doesn't seem like there's anything going on that should cause a java crash. But I'm getting desperate as the paper needs to be resubmitted tomorrow :( Should we take this off the mailing list until a fix/problem can be found? _jason On Tue, Apr 29, 2008 at 6:45 PM, Bob Hanson <ha...@st...> wrote: > > Not Found > > The requested URL /~pappy/clotelab/lm/getResults.php was not found on > this server. > > ------------------------------------------------------------------------ > Apache/2.0.54 Server at www.clavius.com Port 80 > > Jason Persampieri wrote: > > > this is it. It has been 're-crufted' (that is, it's the full version > > of the page again) :) > > > > > http://clavius/~pappy/clotelab/lm/getResults.php?id=5146836237250173881&jmol=1<http://clavius/%7Epappy/clotelab/lm/getResults.php?id=5146836237250173881&jmol=1> > > < > http://clavius/%7Epappy/clotelab/lm/getResults.php?id=5146836237250173881&jmol=1 > > > > > > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by the 2008 JavaOne(SM) Conference > Don't miss this year's exciting event. There's still time to save $100. > Use priority code J8TL2D2. > > http://ad.doubleclick.net/clk;198757673;13503038;p?http://java.sun.com/javaone > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users > |
From: Bob H. <ha...@st...> - 2008-04-29 03:07:35
|
Jason, two comments. No sense in bothering with Jmol Version 11.3.6 2007-07-23 06:14 First try to reproduce the problem with Jmoll 11.4.3 or 11.5.30 (not 11.5.31--that's broken for the applet) But, also, take a look at your HTML coding: <div id="jmolpanel"> <a href="getResults.php?id=5146836237250173881&jmol=1">go</a></p> </div> </div> </div> </p> without <p>, two </div>s without <div> -- these are just asking for trouble. <div id="jmolpanel"> <div id="jmoloriginalpanel"> <div id="jmoloriginalapplet"> <script> jmolApplet(100, "","original"); </script> </div> <br /> </div> <div id="jmolcurrentpanel"> <div id="jmoloriginalapplet"> <script> jmolApplet(200, "","current"); </script> </div><br/> <div id='animationControlsPanel'> <div id='animationControls'> <input id='firstframe' type="button" value='First' /> <input id='prevframe' type="button" value='Prev.' /> <input id='playpause' type="button" value='Play' /> <input id='nextframe' type="button" value='Next' /> <input id='lastframe' type="button" value='Last' /> </div> </div> </div> what are these next? </div> </div> </div> </div> Bob Hanson Jason Persampieri wrote: > I am getting a hard Firefox crash (the browser locks up) in WinXP. > > My page has 2 jmol applets. They are both declared within the html > (using separate <script>jmolApplet(...)</script> chunks) > > In the Java Console, I see this error (full error text at the bottom > of this email): > > java.lang.RuntimeException: Error while creating embedded frame > at sun.plugin.viewer.WNetscapePluginObject.createFrame(Unknown > Source) > at sun.plugin.viewer.WNetscapePluginObject.setWindow(Unknown Source) > > It seems that if this error hits, jmol still tries to perform > operations on the applet, and perhaps it is just not there? That's > pure speculation though. > > Oh, and of course the crash is very finicky. If I've successfully > loaded jmol on another page visit, or load my applets at different > points in the page, the crash does not occur. Currently, I can > reproduce the crash every time by going to > (http://clavius.bc.edu/~pappy/clotelab/lm/getResults.php?id=5146836237250173881 > <http://clavius.bc.edu/%7Epappy/clotelab/lm/getResults.php?id=5146836237250173881> ... > click 'Go') immediately after starting Firefox, whereas my neighbor > can load the page just fine. In fact, if I simply take out some > extraneous <div>s from my page, the error goes away (in this > simplified version of the page... that's not a usable "fix") Aaaaaaargh! > > Any help would be greatly appreciated. > > Jason Persampieri > Programmer > Boston College - Bioinformatics > > (full error text with tracing info follows) > Java Plug-in 1.6.0_05 > Using JRE version 1.6.0_05 Java HotSpot(TM) Client VM > User home directory = C:\Documents and Settings\Persampi > network: Loading user-defined proxy configuration ... > network: Done. > network: Loading proxy configuration from Netscape Navigator ... > network: Error reading registry file: C:\Documents and > Settings\Persampi\Application Data\Mozilla\registry.dat > network: Done. > network: Loading browser proxy configuration ... > network: Done. > network: Proxy Configuration: Browser Proxy Configuration > > ---------------------------------------------------- > c: clear console window > f: finalize objects on finalization queue > g: garbage collect > h: display this help message > l: dump classloader list > m: print memory usage > o: trigger logging > p: reload proxy configuration > q: hide console > r: reload policy configuration > s: dump system and deployment properties > t: dump thread list > v: dump thread stack > x: clear classloader cache > 0-5: set trace level to <n> > ---------------------------------------------------- > basic: Referencing classloader: sun.plugin.ClassLoaderInfo@922804 > <mailto:sun.plugin.ClassLoaderInfo@922804>, refcount=1 > basic: Added progress listener: sun.plugin.util.GrayBoxPainter@1908ca1 > <mailto:sun.plugin.util.GrayBoxPainter@1908ca1> > basic: Loading applet ... > basic: Initializing applet ... > basic: Starting applet ... > basic: completed perf rollup > network: Cache entry found [url: > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar>, version: null] > network: Connecting > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar> with > proxy=DIRECT > network: ResponseCode for > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar> : 304 > network: Encoding for > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar> : null > network: Disconnect connection to > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar> > network: No certificate info for unsigned JAR file: > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar> > network: Cache entry found [url: > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Main.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Main.jar>, > version: null] > network: Connecting > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Main.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Main.jar> with > proxy=DIRECT > network: ResponseCode for > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Main.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Main.jar> : 304 > network: Encoding for > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Main.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Main.jar> : null > network: Disconnect connection to > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Main.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Main.jar> > network: No certificate info for unsigned JAR file: > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Main.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Main.jar> > network: Cache entry found [url: > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Core.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Core.jar>, > version: null] > network: Connecting > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Core.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Core.jar> with > proxy=DIRECT > liveconnect: JavaScript: calling Java system code > liveconnect: JavaScript: UniversalJavaPermission enabled > liveconnect: JavaScript: calling Java system code > liveconnect: JavaScript: UniversalJavaPermission enabled > network: ResponseCode for > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Core.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Core.jar> : 304 > liveconnect: JavaScript: calling Java system code > liveconnect: JavaScript: UniversalJavaPermission enabled > network: Encoding for > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Core.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Core.jar> : null > network: Disconnect connection to > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Core.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Core.jar> > liveconnect: JavaScript: calling Java system code > liveconnect: JavaScript: UniversalJavaPermission enabled > liveconnect: JavaScript: calling Java system code > liveconnect: JavaScript: UniversalJavaPermission enabled > liveconnect: JavaScript: calling Java system code > liveconnect: JavaScript: UniversalJavaPermission enabled > liveconnect: JavaScript: calling Java system code > liveconnect: JavaScript: UniversalJavaPermission enabled > network: No certificate info for unsigned JAR file: > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Core.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Core.jar> > ClassPreloader - javax.vecmath.Vector3f+ > ClassPreloader - javax.vecmath.Point3f+ > ClassPreloader - javax.vecmath.Matrix3f+ > network: Cache entry found [url: > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Jars.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Jars.jar>, > version: null] > network: Connecting > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Jars.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Jars.jar> with > proxy=DIRECT > network: ResponseCode for > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Jars.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Jars.jar> : 304 > network: Encoding for > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Jars.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Jars.jar> : null > network: Disconnect connection to > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Jars.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Jars.jar> > network: No certificate info for unsigned JAR file: > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Jars.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Jars.jar> > ClassPreloader - javax.vecmath.Point3i+ > ClassPreloader - org.jmol.g3d.Graphics3D > ClassPreloader - org.jmol.g3d.Sphere3D > ClassPreloader - org.jmol.g3d.Line3D > ClassPreloader - org.jmol.g3d.Cylinder3D > urlImage=jar:http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar!/jmol75x29x8.gif > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar%21/jmol75x29x8.gif> > ClassPreloader - org.jmol.g3d.Colix3D > Init jmol > language=en_US > Jmol applet jmolAppletoriginal > AppletRegistry.checkIn(jmolAppletoriginal) > network: Cache entry found [url: > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar>, version: null] > network: No certificate info for unsigned JAR file: > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0.jar> > ClassPreloader - org.jmol.g3d.Shade3D > ClassPreloader - org.jmol.adapter.smarter.SmarterJmolAdapter > ClassPreloader - org.jmol.adapter.smarter.Atom > ClassPreloader - org.jmol.adapter.smarter.Bond > ClassPreloader - org.jmol.adapter.smarter.AtomSetCollection > ClassPreloader - org.jmol.adapter.smarter.AtomSetCollectionReader > network: Cache entry found [url: > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar>, > version: null] > network: Connecting > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar> with > proxy=DIRECT > network: ResponseCode for > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar> : 304 > network: Encoding for > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar> : null > network: Disconnect connection to > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar> > network: No certificate info for unsigned JAR file: > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar> > ClassPreloader - org.jmol.adapter.smarter.Resolver > ClassPreloader - org.jmol.popup.JmolPopup > network: Cache entry found [url: > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Popup.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Popup.jar>, > version: null] > network: Connecting > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Popup.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Popup.jar> with > proxy=DIRECT > network: ResponseCode for > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Popup.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Popup.jar> : 304 > network: Encoding for > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Popup.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Popup.jar> : null > network: Disconnect connection to > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Popup.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Popup.jar> > network: No certificate info for unsigned JAR file: > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Popup.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Popup.jar> > network: Cache entry found [url: > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar>, > version: null] > network: No certificate info for unsigned JAR file: > http://clavius/~pappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar > <http://clavius/%7Epappy/clotelab/lm/jmol/JmolApplet0_Viewer.jar> > viewer.setIntProperty(_version,1103006) - integer variable defined > (C) 2007 Jmol Development > Jmol Version 11.3.6 2007-07-23 06:14 > java.vendor:Sun Microsystems Inc. > java.version:1.6.0_05 > os.name:Windows XP > memory:2.3/5.2 > appletId:jmolAppletoriginal > appletDocumentBase=http://clavius/~pappy/clotelab/lm/getResults.php?id=5146836237250173881&jmol=1 > <http://clavius/%7Epappy/clotelab/lm/getResults.php?id=5146836237250173881&jmol=1> > liveconnect: the url of the applet is http://clavius <http://clavius/> > and the permission is = false > java.lang.RuntimeException: Error while creating embedded frame > at sun.plugin.viewer.WNetscapePluginObject.createFrame(Unknown Source) > at sun.plugin.viewer.WNetscapePluginObject.setWindow(Unknown Source) > liveconnect: JSObject::getMember: name=document > liveconnect: the url of the applet is http://clavius <http://clavius/> > and the permission is = false > liveconnect: JavaScript: calling Java system code > liveconnect: JavaScript: default security policy = http://clavius > <http://clavius/> > liveconnect: JavaScript: calling Java system code > liveconnect: JavaScript: default security policy = http://clavius > <http://clavius/> > liveconnect: JavaScript: calling Java system code > liveconnect: JavaScript: default security policy = http://clavius > <http://clavius/> > liveconnect: JavaScript: calling Java system code > liveconnect: JavaScript: default security policy = http://clavius > <http://clavius/> > liveconnect: JavaScript: calling Java system code > liveconnect: JavaScript: default security policy = http://clavius > <http://clavius/> > > >------------------------------------------------------------------------ > >------------------------------------------------------------------------- >This SF.net email is sponsored by the 2008 JavaOne(SM) Conference >Don't miss this year's exciting event. There's still time to save $100. >Use priority code J8TL2D2. >http://ad.doubleclick.net/clk;198757673;13503038;p?http://java.sun.com/javaone > >------------------------------------------------------------------------ > >_______________________________________________ >Jmol-users mailing list >Jmo...@li... >https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |
From: Jason P. <jmo...@pe...> - 2008-04-29 03:20:20
|
Bob, Hehe. The page (which I inherited) was originally a spaghetti of divs and php code all intermingled. What's left was the minimum necessary to cause the crash after culling out as much as I could. When I properly format it, the crash goes away... but sadly not in the 'full' page. Believe me, I cringe every time I look at the mess :) I'll check out a newer version of jmol... I did update recently, but apparently I overwrote it when getting a 'fresh' copy of the project. Ugh. _jason On Mon, Apr 28, 2008 at 11:07 PM, Bob Hanson <ha...@st...> wrote: > Jason, two comments. > > No sense in bothering with Jmol Version 11.3.6 2007-07-23 06:14 > First try to reproduce the problem with Jmoll 11.4.3 or 11.5.30 (not > 11.5.31--that's broken for the applet) > > But, also, take a look at your HTML coding: > > <div id="jmolpanel"> > <a href="getResults.php?id=5146836237250173881&jmol=1">go</a></p> > </div> > </div> > </div> > > > </p> without <p>, two </div>s without <div> -- these are just asking for > trouble. > > <div id="jmolpanel"> > <div id="jmoloriginalpanel"> > <div id="jmoloriginalapplet"> > <script> > jmolApplet(100, "","original"); > </script> > </div> <br /> > </div> > <div id="jmolcurrentpanel"> > <div id="jmoloriginalapplet"> > <script> > jmolApplet(200, "","current"); > </script> > > </div><br/> > <div id='animationControlsPanel'> > <div id='animationControls'> > <input id='firstframe' type="button" value='First' > /> > <input id='prevframe' type="button" value='Prev.' > /> > <input id='playpause' type="button" value='Play' > /> > <input id='nextframe' type="button" value='Next' > /> > <input id='lastframe' type="button" value='Last' > /> > </div> > > </div> > </div> > > what are these next? > </div> > </div> > </div> > > > </div> > > > Bob Hanson > > |
From: Bob H. <ha...@st...> - 2008-04-29 06:24:36
|
Well, there might be HTML editors that can ease your pain. But I think that's the real problem. Jason Persampieri wrote: > Bob, > > Hehe. The page (which I inherited) was originally a spaghetti of divs > and php code all intermingled. What's left was the minimum necessary > to cause the crash after culling out as much as I could. When I > properly format it, the crash goes away... but sadly not in the 'full' > page. Believe me, I cringe every time I look at the mess :) > > > I'll check out a newer version of jmol... I did update recently, but > apparently I overwrote it when getting a 'fresh' copy of the project. > Ugh. > > _jason > > > On Mon, Apr 28, 2008 at 11:07 PM, Bob Hanson <ha...@st... > <mailto:ha...@st...>> wrote: > > Jason, two comments. > > No sense in bothering with Jmol Version 11.3.6 2007-07-23 06:14 > First try to reproduce the problem with Jmoll 11.4.3 or 11.5.30 (not > 11.5.31--that's broken for the applet) > > But, also, take a look at your HTML coding: > > <div id="jmolpanel"> > <a href="getResults.php?id=5146836237250173881&jmol=1">go</a></p> > </div> > </div> > </div> > > > </p> without <p>, two </div>s without <div> -- these are just > asking for > trouble. > > <div id="jmolpanel"> > <div id="jmoloriginalpanel"> > <div id="jmoloriginalapplet"> > <script> > jmolApplet(100, "","original"); > </script> > </div> <br /> > </div> > <div id="jmolcurrentpanel"> > <div id="jmoloriginalapplet"> > <script> > jmolApplet(200, "","current"); > </script> > > </div><br/> > <div id='animationControlsPanel'> > <div id='animationControls'> > <input id='firstframe' type="button" > value='First' /> > <input id='prevframe' type="button" > value='Prev.' /> > <input id='playpause' type="button" > value='Play' /> > <input id='nextframe' type="button" > value='Next' /> > <input id='lastframe' type="button" > value='Last' /> > </div> > > </div> > </div> > > what are these next? > </div> > </div> > </div> > > > </div> > > > Bob Hanson > > >------------------------------------------------------------------------ > >------------------------------------------------------------------------- >This SF.net email is sponsored by the 2008 JavaOne(SM) Conference >Don't miss this year's exciting event. There's still time to save $100. >Use priority code J8TL2D2. >http://ad.doubleclick.net/clk;198757673;13503038;p?http://java.sun.com/javaone > >------------------------------------------------------------------------ > >_______________________________________________ >Jmol-users mailing list >Jmo...@li... >https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |
From: Jason P. <jmo...@pe...> - 2008-04-29 15:52:02
|
My HTML (and CSS) now validate, and I've updated to jmol 11.4.2. Sadly, the crash still occurs. Any ideas what can cause the "Error while creating embedded frame"? I can't seem to find any info on this error or the WNetscapePluginObject. That said, I don't have any Java experience to go on here. _jason On Tue, Apr 29, 2008 at 2:24 AM, Bob Hanson <ha...@st...> wrote: > Well, there might be HTML editors that can ease your pain. But I think > that's the real problem. > > Jason Persampieri wrote: > > > Bob, > > > > Hehe. The page (which I inherited) was originally a spaghetti of divs > > and php code all intermingled. What's left was the minimum necessary > > to cause the crash after culling out as much as I could. When I > > properly format it, the crash goes away... but sadly not in the 'full' > > page. Believe me, I cringe every time I look at the mess :) > > > > > > I'll check out a newer version of jmol... I did update recently, but > > apparently I overwrote it when getting a 'fresh' copy of the project. > > Ugh. > > > > _jason > > > > > > On Mon, Apr 28, 2008 at 11:07 PM, Bob Hanson <ha...@st... > > <mailto:ha...@st...>> wrote: > > > > Jason, two comments. > > > > No sense in bothering with Jmol Version 11.3.6 2007-07-23 06:14 > > First try to reproduce the problem with Jmoll 11.4.3 or 11.5.30 (not > > 11.5.31--that's broken for the applet) > > > > But, also, take a look at your HTML coding: > > > > <div id="jmolpanel"> > > <a href="getResults.php?id=5146836237250173881&jmol=1">go</a></p> > > </div> > > </div> > > </div> > > > > > > </p> without <p>, two </div>s without <div> -- these are just > > asking for > > trouble. > > > > <div id="jmolpanel"> > > <div id="jmoloriginalpanel"> > > <div id="jmoloriginalapplet"> > > <script> > > jmolApplet(100, "","original"); > > </script> > > </div> <br /> > > </div> > > <div id="jmolcurrentpanel"> > > <div id="jmoloriginalapplet"> > > <script> > > jmolApplet(200, "","current"); > > </script> > > > > </div><br/> > > <div id='animationControlsPanel'> > > <div id='animationControls'> > > <input id='firstframe' type="button" > > value='First' /> > > <input id='prevframe' type="button" > > value='Prev.' /> > > <input id='playpause' type="button" > > value='Play' /> > > <input id='nextframe' type="button" > > value='Next' /> > > <input id='lastframe' type="button" > > value='Last' /> > > </div> > > > > </div> > > </div> > > > > what are these next? > > </div> > > </div> > > </div> > > > > > > </div> > > > > > > Bob Hanson > > > > > >------------------------------------------------------------------------ > > > >------------------------------------------------------------------------- > >This SF.net email is sponsored by the 2008 JavaOne(SM) Conference > >Don't miss this year's exciting event. There's still time to save $100. > >Use priority code J8TL2D2. > > > http://ad.doubleclick.net/clk;198757673;13503038;p?http://java.sun.com/javaone > > > >------------------------------------------------------------------------ > > > >_______________________________________________ > >Jmol-users mailing list > >Jmo...@li... > >https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by the 2008 JavaOne(SM) Conference > Don't miss this year's exciting event. There's still time to save $100. > Use priority code J8TL2D2. > > http://ad.doubleclick.net/clk;198757673;13503038;p?http://java.sun.com/javaone > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users > |
From: Bob H. <ha...@st...> - 2008-04-29 17:58:04
|
What's that link again? Jason Persampieri wrote: > My HTML (and CSS) now validate, and I've updated to jmol 11.4.2. > <http://11.4.2.> > > Sadly, the crash still occurs. Any ideas what can cause the "Error > while creating embedded frame"? I can't seem to find any info on this > error or the WNetscapePluginObject. That said, I don't have any Java > experience to go on here. > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |
From: Jason P. <jmo...@pe...> - 2008-04-29 18:10:03
|
this is it. It has been 're-crufted' (that is, it's the full version of the page again) :) http://clavius/~pappy/clotelab/lm/getResults.php?id=5146836237250173881&jmol=1<http://clavius/%7Epappy/clotelab/lm/getResults.php?id=5146836237250173881&jmol=1> On Tue, Apr 29, 2008 at 1:57 PM, Bob Hanson <ha...@st...> wrote: > What's that link again? > > Jason Persampieri wrote: > > > My HTML (and CSS) now validate, and I've updated to jmol 11.4.2. > > <http://11.4.2.> > > > > Sadly, the crash still occurs. Any ideas what can cause the "Error > > while creating embedded frame"? I can't seem to find any info on this > > error or the WNetscapePluginObject. That said, I don't have any Java > > experience to go on here. > > > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by the 2008 JavaOne(SM) Conference > Don't miss this year's exciting event. There's still time to save $100. > Use priority code J8TL2D2. > > http://ad.doubleclick.net/clk;198757673;13503038;p?http://java.sun.com/javaone > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users > |