gabedit-users — Collaborative support and tips for Gabedit users

[Gabedit-users] Is there an Undo button or a similar feature in gabedit?

[weber <we...@ch...>]

Hello,

could somebody give me a hint, if there is a possibility to Undo 
unwanted actions in Gabedit? It would be very convenient on creation on 
own molecules. I searched the Documentation and the mailing-lists for 
"undo" but found nothing. If there isn´t the possibility, this would be 
my feature request for the next version.

Many thanks in advance,
Johannes

-- 
------------------------------------------------------------
Dr. Johannes Weber
Inorganic Materials Chemistry
Department of Chemistry/Biology
University of Siegen
Adolf-Reichwein-Str. 2, room AR-F 107
D-57068 Siegen
phone: +49-271-740-2726   fax: +49-271-740-2555
email: we...@ch...
------------------------------------------------------------

[Gabedit-users] Problem with linking to GAMESS

[Stanford S. <ssp...@ol...>]

I am new to using Gabedit and have successfully linked it to ORCA.  However, it will not link to GAMESS for some reason.  It builds the input file fine but does not run it.  I just downloaded GAMESS so I suspect it is a link problem.  Any direction out there?

Thank

Stan Spurlin
CONFIDENTIALITY NOTICE: This message is from the Olathe Public Schools. The message and any attachments may be confidential or privileged and are intended only for the individual or entity identified above as the addressee. If you are not the addressee, or if this message has been addressed to you in error, you are not authorized to read, copy or distribute this message or any attachments. We ask that you please delete this message and any attachments and notify the sender by return email or by phone (913) 780-7000.

[Gabedit-users] Running orca inside gabedit

[Anthony N. <ant...@dp...>]

Hi all,

I’m struggling to get openMPI orca running inside gabedit version 2.4.8 on mint Linux.

I have two executables called orca. One inside /usr/bin and the other in a subdirectory of home. It is the binary inside the subdirectory of home that I want to call. I therefore changed the command in the gabedit preferences. A note to say, I can execute orca from the command line without any issues using:

/home/mint/orca_4_0_1_2_linux_x86-64_openmpi202/orca NoName.inp >& NoName.out &

I have also defined the necessary openMPI in .bashrc:

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/mint/code/openmpi-2.0.1/lib

Running on the command line works great.

However, when executing inside gabedit, I get this error:

/home/mint/orca_4_0_1_2_linux_x86-64_openmpi202/orca_gtoint_mpi: error while loading shared libraries: libmpi.so.20: cannot open shared object file: No such file or directory
/home/mint/orca_4_0_1_2_linux_x86-64_openmpi202/orca_gtoint_mpi: error while loading shared libraries: libmpi.so.20: cannot open shared object file: No such file or directory
/home/mint/orca_4_0_1_2_linux_x86-64_openmpi202/orca_gtoint_mpi: error while loading shared libraries: libmpi.so.20: cannot open shared object file: No such file or directory
/home/mint/orca_4_0_1_2_linux_x86-64_openmpi202/orca_gtoint_mpi: error while loading shared libraries: libmpi.so.20: cannot open shared object file: No such file or directory
/home/mint/orca_4_0_1_2_linux_x86-64_openmpi202/orca_gtoint_mpi: error while loading shared libraries: libmpi.so.20: cannot open shared object file: No such file or directory
/home/mint/orca_4_0_1_2_linux_x86-64_openmpi202/orca_gtoint_mpi: error while loading shared libraries: libmpi.so.20: cannot open shared object file: No such file or directory
/home/mint/orca_4_0_1_2_linux_x86-64_openmpi202/orca_gtoint_mpi: error while loading shared libraries: libmpi.so.20: cannot open shared object file: No such file or directory
/home/mint/orca_4_0_1_2_linux_x86-64_openmpi202/orca_gtoint_mpi: error while loading shared libraries: libmpi.so.20: cannot open shared object file: No such file or directory
[file orca_main/gtoint.cpp, line 137]: ORCA finished by error termination in ORCA_GTOInt


Any suggestions would be appreciated.
Thanks
Anthony

Dr Anthony Nash PhD MRSC
Department of Physiology, Anatomy & Genetics
University of Oxford
OX1 3PT UK

[Gabedit-users] command line access to Molecular Mechanics

[Luis F. de F. <Lui...@eb...>]

Hi,

I would like to know if it is possible or if it is planned to have access to the Molecule Mechanics part of Gabedit using the command line? That would be very useful for running these simulations in a server because these are a bit heavy for a desktop.

Best regards,

Luis F. de Figueiredo
Postdoctoral Fellow

European Bioinformatics Institute (EBI)
Chemoinformatics and Metabolism Team
Wellcome Trust Genome Campus
Hinxton, Cambridgeshire
CB10 1SD, UK

[Gabedit-users] Intallation Problem on Fedora core 15 ..

[Sergio G. <ser...@gm...>]

Hi

My name is Sergio Garay, I have installed Gabedit on a Fedora Core 15
linux distribution.

I've tried using YUM, and also the current stable version of gabedit
2.4.2 installer, both with the same result, which I described below

The program starts apparently fine, but when I tried to use the
molecule builder windows, the program is closed and it gave the
following message..


 *** Cannot find the double-buffered visual.

*** Trying single-buffered visual.
*** No appropriate OpenGL-capable visual found.

I'm using a GE-FORCE 440 1Gb ddr3 video card, in a I7 2600k processor,
in general without any problem.

Could you give any piece of advice to solve the problem ..?

Thank you in advance

Sergio

--
Sergio Garay
Dr. en Ciencias Biológicas
Facultad de Bioquimica y Cs. Biológicas
Universidad Nacional del Litoral
Santa Fe - Argentina
C.C. 242 - Ciudad Universitaria - C.P. S3000ZAA
Argentina
Ph. +54 (342) 4575-213
Fax. +54 (342) 4575-221

Re: [Gabedit-users] Problem with GAMESS US for Windows

[<all...@la...>]

Hello,

OK you use the native version of WinGamess.
Gabedit use the cygwing version of Wingamess.
The native version will be supported by Gabedit in the next version.
However you can use the native version using the runWGMS bat file.

For doing it  :
Download the runWGMS.bak file from :
https://sites.google.com/site/allouchear/Home/gabedit/tools-1/runWGMS.bak?attredirects=0&d=1

Save it in c:\gamess.64 directory and change the name from runWGMS.bak to
runWGMS.bat

build your Gamess input file.
click to run icon (from the main toolbar of Gabedit)
Select the "FireFly" program in the run window.
Change firefly command to execute in "c:\gamess.64\runWGMS.bat"

Please let me known if that works or not.

Best regards,

> Hello,
> I renamed the  gamess.11-32.exe  in  gamess.05.exe
> But it doesn't work, the problem is the same, the log file exist but is
> empty.
> Regards
>
>
>
> -----Original Message-----
> From: all...@la... [mailto:all...@la...]
> Sent: Tuesday, June 14, 2011 6:39 PM
> To: Blairon, Jean-marie
> Cc: gab...@li...
> Subject: Re: [Gabedit-users] Problem with GAMESS US for Windows
>
> Hello,
>
> Copy  gamess.11-32.exe  in  gamess.05.exe
>
> and try again
>
> Regards,
>
> > Hello all,
> > I can't start a Windows Gamess US job from Gabedit.
> > I tried the last version of gamess.11-32.exe or gamess.11-64.exe
> > nothing happend.
> > Can somebody help me
> > thanks
> >
> >
> >
> > ----------------------------------------------------------------------
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Re: [Gabedit-users] Problem with GAMESS US for Windows

[<all...@la...>]

Hello,

Copy  gamess.11-32.exe  in  gamess.05.exe

and try again

Regards,

> Hello all,
> I can't start a Windows Gamess US job from Gabedit.
> I tried the last version of gamess.11-32.exe or gamess.11-64.exe
> nothing happend.
> Can somebody help me
> thanks
>
>
>
> ---------------------------------------------------------------------------
> This e-mail is confidential.
> If you are not the addressee or an authorized recipient of this message,
> any distribution, copying, publication or use of this information for any
> purpose is prohibited.
> Please notify the sender immediately by e-mail and then delete this message.
> Ce message est confidentiel.
> Si vous n'etes pas le destinataire designe de ce message ou une personne
> autorisee a l'utiliser, toute distribution, copie, publication ou usage a
> quelques fins que ce soit des informations contenues dans ce message sont
> interdits.
> Merci d'informer immediatement l'expediteur par messagerie electronique et
> d'ensuite detruire ce message.
> ---------------------------------------------------------------------------
>




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[Gabedit-users] Problem with GAMESS US for Windows

[Blairon, Jean-m. <Jea...@so...>]

Hello all,
I can't start a Windows Gamess US job from Gabedit.
I tried the last version of gamess.11-32.exe or gamess.11-64.exe
nothing happend.
Can somebody help me
thanks
 


--------------------------------------------------------------------------- 
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If you are not the addressee or an authorized recipient of this message, 
any distribution, copying, publication or use of this information for any 
purpose is prohibited. 
Please notify the sender immediately by e-mail and then delete this message. 
Ce message est confidentiel. 
Si vous n'etes pas le destinataire designe de ce message ou une personne 
autorisee a l'utiliser, toute distribution, copie, publication ou usage a 
quelques fins que ce soit des informations contenues dans ce message sont 
interdits. 
Merci d'informer immediatement l'expediteur par messagerie electronique et 
d'ensuite detruire ce message. 
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[Gabedit-users] Issues with having Gabedit run in remote host

[Stournara, M. <mar...@br...>]

Hi team-

I am writing to ask about your insight in a problem I have running gabedit
in a remote host both from linux and from windows. I successfully installed
Gabedit 2.3.6 both in my Ubuntu (I installed the binary),  but unfortunately
I cannot run anything. Here is the problem I am experiencing:

I have installed the 2.3.6 version from their website and have followed the
usual steps to create the input file of my calculation. I open the program
fro a terminal and get the following message (I tried to fix it with sudo
apt-get install libcanberra-gtk-module, but it is still there):

Gtk-Message: Failed to load module "canberra-gtk-module":
libcanberra-gtk-module.so: cannot open shared object file: No such file or
directory
Fontconfig error: Cannot load default config file

Then Gabedit opens and I create an initial structure that I want to run with
Gaussian. After I follow the instructions in Settings->Preferences->NetWork->
Help, I submit my jpb as follows:

Run -> Run a ...-> Remote host
Change to rung03 the command to execute line
Change the hostname to n <http://ted.hetchem.brown.edu/>ame of my remote
host
Change the Login line to my account name
NO OPTION FOR PSWD (in ssh/scp protocol the box is grey and doesn't allow me
to type anything)
Click on OK

I get the following error message:

(.gabedit.exe:2324): Gtk-CRITICAL **: gtk_widget_has_screen: assertion
`GTK_IS_WIDGET (widget)' failed

(.gabedit.exe:2324): Gtk-WARNING **: Unable to find default local
directory monitor typ
*
*
I've been trying to fix it in several ways, but nothing seems to work
properly. Hence, any suggestion form you part is more than welcome.

Thanks in advance,
m
*
*
*
*

Re: [Gabedit-users] GAMESS not producing log files

[<all...@la...>]

Good,
You can use his script for run Gamess  from gabedit : uberrungms
but you should change  $root.out in $root.log




> I have some good news.  Someone in a gamess forum was able to send me a
> solution by appending a command to the rungms script to print to a log file
> instead of printing by default to the terminal.
> I could have also created a script to add this functionality, but if you
> have another solution from within gabedit to make cmd files that do this
> automatically, I would like to know that, too.
> Thank you very much.
> -James Budarz
>
> On Sat, Feb 26, 2011 at 2:37 PM, James Budarz <jam...@br...>wrote:
>
> > Here is the cmd file (renamed as a jpg for security reasons, but you can
> > rename it back to .cmd).  I can see now that if I could get the program to
> > just append the directory for the output file, then it would produce a log
> > file, but I do not know how to do that.
> > Thank you for responding so promptly.
> > -James
> >
> > On Sat, Feb 26, 2011 at 2:18 PM, <all...@la...> wrote:
> >
> >> Hello,
> >> What is you OS ?
> >>
> >> Using the default option, Gabedit create a .cmd file. Please send me this
> >> file.
> >>
> >>
> >> Regards,
> >>
> >> > Hello all,
> >> > I use Gabedit to create input files for GAMESS, which unfortunately does
> >> not
> >> > allow any command to be written that follows  "rungms FILENAME.inp".  I
> >> have
> >> > been able to set the default number of processors so that I don't need
> >> to
> >> > follow that command with the number of CPUs to use.  However, this means
> >> > that my calculation is not producing a .LOG file in the directory in
> >> which
> >> > the input file is read from.
> >> > Is there a way to set a default location so that I can get a log file to
> >> be
> >> > automatically produced in this location? I tried posting this to the
> >> gamess
> >> > google group, but I've had no success.
> >> > Thank you all for your help.
> >> >
> >> > --
> >> > James Budarz
> >> > Department of Chemistry, *Brown University*
> >> > B.S. Chemistry, *University of Connecticut*
> >> > B.A. French Cultural and Literary Studies, *University of Connecticut*
> >> > James_Budarz@Brown.edu
> >> > Mobile phone: 860-597-0473
> >> >
> >>
> >>
> >>
> >>
> >> --------------------------------------------------------------------------
> >> Ce message a été envoyé depuis le webmail IMP (Internet Messaging Program)
> >>
> >
> >
> >
> > --
> > James Budarz
> > B.S. Chemistry
> >
> > B.A. French Cultural and Literary Studies
> > University of Connecticut
> > James_Budarz@Brown.edu
> > Mobile phone: 860-597-0473
> >
>
>
>
> --
> James Budarz
> B.S. Chemistry
> B.A. French Cultural and Literary Studies
> University of Connecticut
> James_Budarz@Brown.edu
> Mobile phone: 860-597-0473
>




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Re: [Gabedit-users] GAMESS not producing log files

[<all...@la...>]

Hello,
What is you OS ?

Using the default option, Gabedit create a .cmd file. Please send me this file.


Regards,

> Hello all,
> I use Gabedit to create input files for GAMESS, which unfortunately does not
> allow any command to be written that follows  "rungms FILENAME.inp".  I have
> been able to set the default number of processors so that I don't need to
> follow that command with the number of CPUs to use.  However, this means
> that my calculation is not producing a .LOG file in the directory in which
> the input file is read from.
> Is there a way to set a default location so that I can get a log file to be
> automatically produced in this location? I tried posting this to the gamess
> google group, but I've had no success.
> Thank you all for your help.
>
> --
> James Budarz
> Department of Chemistry, *Brown University*
> B.S. Chemistry, *University of Connecticut*
> B.A. French Cultural and Literary Studies, *University of Connecticut*
> James_Budarz@Brown.edu
> Mobile phone: 860-597-0473
>




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[Gabedit-users] GAMESS not producing log files

[Budarz, J. <jam...@br...>]

Hello all,
I use Gabedit to create input files for GAMESS, which unfortunately does not
allow any command to be written that follows  "rungms FILENAME.inp".  I have
been able to set the default number of processors so that I don't need to
follow that command with the number of CPUs to use.  However, this means
that my calculation is not producing a .LOG file in the directory in which
the input file is read from.
Is there a way to set a default location so that I can get a log file to be
automatically produced in this location? I tried posting this to the gamess
google group, but I've had no success.
Thank you all for your help.

-- 
James Budarz
Department of Chemistry, *Brown University*
B.S. Chemistry, *University of Connecticut*
B.A. French Cultural and Literary Studies, *University of Connecticut*
James_Budarz@Brown.edu
Mobile phone: 860-597-0473

Re: [Gabedit-users] Problems installing Gabedit

[Allouche Abdul-r. <all...@la...>]

>
> locate libGLU.so.1
> usr/lib64/libGLU.so.1
> /usr/lib64/libGLU.so.1.3.060501
OK. Your libGLU.so.1  is a 64 bits file.
Gabedit is compiled using a  32 bits compiler.
I send to you the 32 bits libGLU.so.1

>
>
>
>
>
>
>     > On Tue, Jan 25, 2011 at 4:34 PM, <all...@la...
>     <mailto:all...@la...>> wrote:
>     >
>     > > Hello,
>     > >
>     > > Did you install gtk ?
>     > >
>     > > type  :
>     > > pkg-config gtk+-2.0 --libs
>     > > pkg-config gtk+-2.0 --cflags
>     > >
>     >
>     > pkg-config gtk+-2.0 --libs
>     > -L/lib64 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lm
>     > -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0
>     -ldl
>     > -lglib-2.0
>     >
>     > [root@ted Display]# pkg-config gtk+-2.0 --cflags
>     > -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include
>     -I/usr/include/atk-1.0
>     > -I/usr/include/cairo -I/usr/include/pango-1.0
>     -I/usr/include/glib-2.0
>     > -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2
>     > -I/usr/include/libpng12
>     >
>     >
>     > >
>     > > and send me  the result .
>     > >
>     > > It's more simple to install Gabedit using the installer binary
>     file :
>     > > setupGabedit235wGTK.sh
>     > >
>     >
>     > I renamed setupGabedit235wGTK.sh to Gabeditsetup.sh
>     >
>     > ./Gabeditsetup.sh
>     > ./Gabeditsetup.sh: line 33: $/share/apps/gabedit.tar.gz: No such
>     file or
>     > directory
>     > ./Gabeditsetup.sh: line 35: cd: $/share/apps: No such file or
>     directory
>     > tar: $/share/apps/gabedit.tar.gz: Cannot open: No such file or
>     directory
>     > tar: Error is not recoverable: exiting now
>     > tar: Child returned status 2
>     > tar: Error exit delayed from previous errors
>     > /bin/rm: cannot remove `$/share/apps/gabedit.tar.gz': No such
>     file or
>     > directory
>     > ./Gabeditsetup.sh: line 39: $/share/apps/Gabedit/gabedit: No
>     such file or
>     > directory
>     > ./Gabeditsetup.sh: line 40: cd: OLDPWD not set
>     >
>     > *****************************************
>     > I added Gabedit to your path
>     >      see /root/.cshrc
>     >      and /root/.bashrc files
>     > *****************************************
>     >
>     >
>     > >
>     > > Regards,
>     > >
>     > >
>     > >
>     > > > I need to install Gabedit on our linux server for a class
>     that will be
>     > > using
>     > > > it next week.  Our linux server is the head of a computer
>     cluster running
>     > > > ROCKS.
>     > > >
>     > > > I have downloaded GabeditSrc235 to the server.
>     > > > This a 64 bit Centos system with glibc-2.5-18.el5_1.1
>     > > > I have installed  gtkglext-1.0.6-1.el5.rf.x86_64.rpm
>     > > >
>     > > > I have built gtkglext-1.2.0 in /share/apps.
>     > > >
>     > > > I copied CONFIG.unix from platforms to CONFIG in the top
>     directory of the
>     > > > GabediSrc235 directory.
>     > > > I modified the PKG_CONFIG _PATH definition in CONFIG to
>     > > >
>     > > > PKG_CONFIG_PATH  =
>     > > >
>     "/usr/lib64:/share/apps/gtkglext-1.2.0/:share/apps/lib/pkgconfig"
>     > > >
>     > > > to eliminate the problem in finding gdkglext-1.0.pc.
>     > > >
>     > > > In src/Display/GLArea.c, I had to add the full path to gtkgl.h
>     > > >
>     > > > #include </share/apps/gtkglext-1.2.0/gtk/gtkgl.h>
>     > > >
>     > > > I am still getting multiple errors:
>     > > >
>     > > > In file included from GLArea.c:23:
>     > > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:22:23: error:
>     gdk/gdkgl.h: No such
>     > > > file or directory
>     > > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:24:27: error:
>     gtk/gtkgldefs.h: No
>     > > > such file or directory
>     > > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:25:30: error:
>     gtk/gtkglversion.h:
>     > > No
>     > > > such file or directory
>     > > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:26:27: error:
>     gtk/gtkglinit.h: No
>     > > > such file or directory
>     > > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:27:29: error:
>     gtk/gtkglwidget.h:
>     > > No
>     > > > such file or directory
>     > > > GLArea.c: In function 'init':
>     > > > GLArea.c:772: error: 'GdkGLContext' undeclared (first use in
>     this
>     > > function)
>     > > >
>     > > > although
>     > > >
>     > > > printenv PATH
>     > > >
>     > >
>     > >
>     >
>     /share/apps/gtkglext-1.2.0/gtk:/share/apps/bin:/share/apps/pgi/linux86-64/7.1-1/bin:/opt/gridengine/bin/lx26-amd64:/usr/kerberos/sbin:/usr/kerberos/bin:/opt/gridengine/bin/lx26-amd64:/usr/java/jdk1.5.0_10/bin:/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/opt/maven/bin:/opt/openmpi/bin/:/opt/rocks/bin:/opt/rocks/sbin:/root/bin:/state/partition1/apps/gtkglext-1.2.0/gtk
>     > > >
>     > > > printenv LD_LIBRARY_PATH
>     > > >
>     > >
>     > >
>     >
>     /opt/gridengine/lib/lx26-amd64:/opt/gridengine/lib/lx26-amd64:/share/apps/lib:/usr/lib64:/usr/lib:/share/apps/gtkglext-1.2.0/gtk
>     > > >
>     > > > How can I get this to compile correctly?
>     > > >
>     > > > Thanks for your help.
>     > > >
>     > >
>     > >
>     > >
>     > >
>     > >
>     --------------------------------------------------------------------------
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>     Messaging Program)
>     > >
>     >
>
>
>
>
>     --------------------------------------------------------------------------
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>     Program)
>
>


-- 
Abdul-Rahman ALLOUCHE
Tel : + (33) (0) 472431929
Fax : + (33) (0) 472431507
Email : all...@la...
Web : http://sites.google.com/site/allouchear/

Re: [Gabedit-users] Problems installing Gabedit

[Doll, M. A. <mar...@br...>]

On Tue, Jan 25, 2011 at 4:56 PM, <all...@la...> wrote:

>
> What is the message if you type : sh
>
> sh is prbobably not installed in your system.
> If sh is not installed type, under root : cp /usr/bin/bash /usr/bin/sh
>
> ./GabeditSetup.sh
>

[root@ted apps]# sh

sh-3.1# pwd
/share/apps
sh-3.1# ./Gabeditsetup.sh
./Gabeditsetup.sh: line 33: $/share/apps/gabedit.tar.gz: No such file or
directory
./Gabeditsetup.sh: line 35: cd: $/share/apps: No such file or directory
tar: $/share/apps/gabedit.tar.gz: Cannot open: No such file or directory
tar: Error is not recoverable: exiting now
tar: Child returned status 2
tar: Error exit delayed from previous errors
/bin/rm: cannot remove `$/share/apps/gabedit.tar.gz': No such file or
directory
./Gabeditsetup.sh: line 39: $/share/apps/Gabedit/gabedit: No such file or
directory
./Gabeditsetup.sh: line 40: cd: OLDPWD not set

*****************************************
I added Gabedit to your path
     see /root/.cshrc
     and /root/.bashrc files
*****************************************


>
>
> An other solution :
> Download :
>
> http://sourceforge.net/projects/gabedit/files/gabedit/Gabedit235/Gabedit235LinuxI386Glibc23IncludingGTKLib.tar.gz
>
> and type :
> tar -zxvf Gabedit235LinuxI386Glibc23IncludingGTKLib.tar.gz
> $HOME/Gabedit/gabedit
>

When I execute

 Gabedit/gabedit
./.gabedit.exe: error while loading shared libraries: libGLU.so.1: wrong ELF
class: ELFCLASS64

locate libGLU.so.1
usr/lib64/libGLU.so.1
/usr/lib64/libGLU.so.1.3.060501



>
>
>
> > On Tue, Jan 25, 2011 at 4:34 PM, <all...@la...> wrote:
> >
> > > Hello,
> > >
> > > Did you install gtk ?
> > >
> > > type  :
> > > pkg-config gtk+-2.0 --libs
> > > pkg-config gtk+-2.0 --cflags
> > >
> >
> > pkg-config gtk+-2.0 --libs
> > -L/lib64 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lm
> > -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl
> > -lglib-2.0
> >
> > [root@ted Display]# pkg-config gtk+-2.0 --cflags
> > -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include
> -I/usr/include/atk-1.0
> > -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0
> > -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2
> > -I/usr/include/libpng12
> >
> >
> > >
> > > and send me  the result .
> > >
> > > It's more simple to install Gabedit using the installer binary file :
> > > setupGabedit235wGTK.sh
> > >
> >
> > I renamed setupGabedit235wGTK.sh to Gabeditsetup.sh
> >
> > ./Gabeditsetup.sh
> > ./Gabeditsetup.sh: line 33: $/share/apps/gabedit.tar.gz: No such file or
> > directory
> > ./Gabeditsetup.sh: line 35: cd: $/share/apps: No such file or directory
> > tar: $/share/apps/gabedit.tar.gz: Cannot open: No such file or directory
> > tar: Error is not recoverable: exiting now
> > tar: Child returned status 2
> > tar: Error exit delayed from previous errors
> > /bin/rm: cannot remove `$/share/apps/gabedit.tar.gz': No such file or
> > directory
> > ./Gabeditsetup.sh: line 39: $/share/apps/Gabedit/gabedit: No such file or
> > directory
> > ./Gabeditsetup.sh: line 40: cd: OLDPWD not set
> >
> > *****************************************
> > I added Gabedit to your path
> >      see /root/.cshrc
> >      and /root/.bashrc files
> > *****************************************
> >
> >
> > >
> > > Regards,
> > >
> > >
> > >
> > > > I need to install Gabedit on our linux server for a class that will
> be
> > > using
> > > > it next week.  Our linux server is the head of a computer cluster
> running
> > > > ROCKS.
> > > >
> > > > I have downloaded GabeditSrc235 to the server.
> > > > This a 64 bit Centos system with glibc-2.5-18.el5_1.1
> > > > I have installed  gtkglext-1.0.6-1.el5.rf.x86_64.rpm
> > > >
> > > > I have built gtkglext-1.2.0 in /share/apps.
> > > >
> > > > I copied CONFIG.unix from platforms to CONFIG in the top directory of
> the
> > > > GabediSrc235 directory.
> > > > I modified the PKG_CONFIG _PATH definition in CONFIG to
> > > >
> > > > PKG_CONFIG_PATH  =
> > > > "/usr/lib64:/share/apps/gtkglext-1.2.0/:share/apps/lib/pkgconfig"
> > > >
> > > > to eliminate the problem in finding gdkglext-1.0.pc.
> > > >
> > > > In src/Display/GLArea.c, I had to add the full path to gtkgl.h
> > > >
> > > > #include </share/apps/gtkglext-1.2.0/gtk/gtkgl.h>
> > > >
> > > > I am still getting multiple errors:
> > > >
> > > > In file included from GLArea.c:23:
> > > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:22:23: error: gdk/gdkgl.h: No
> such
> > > > file or directory
> > > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:24:27: error: gtk/gtkgldefs.h:
> No
> > > > such file or directory
> > > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:25:30: error:
> gtk/gtkglversion.h:
> > > No
> > > > such file or directory
> > > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:26:27: error: gtk/gtkglinit.h:
> No
> > > > such file or directory
> > > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:27:29: error:
> gtk/gtkglwidget.h:
> > > No
> > > > such file or directory
> > > > GLArea.c: In function 'init':
> > > > GLArea.c:772: error: 'GdkGLContext' undeclared (first use in this
> > > function)
> > > >
> > > > although
> > > >
> > > > printenv PATH
> > > >
> > >
> > >
> >
>
> /share/apps/gtkglext-1.2.0/gtk:/share/apps/bin:/share/apps/pgi/linux86-64/7.1-1/bin:/opt/gridengine/bin/lx26-amd64:/usr/kerberos/sbin:/usr/kerberos/bin:/opt/gridengine/bin/lx26-amd64:/usr/java/jdk1.5.0_10/bin:/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/opt/maven/bin:/opt/openmpi/bin/:/opt/rocks/bin:/opt/rocks/sbin:/root/bin:/state/partition1/apps/gtkglext-1.2.0/gtk
> > > >
> > > > printenv LD_LIBRARY_PATH
> > > >
> > >
> > >
> >
>
> /opt/gridengine/lib/lx26-amd64:/opt/gridengine/lib/lx26-amd64:/share/apps/lib:/usr/lib64:/usr/lib:/share/apps/gtkglext-1.2.0/gtk
> > > >
> > > > How can I get this to compile correctly?
> > > >
> > > > Thanks for your help.
> > > >
> > >
> > >
> > >
> > >
> > >
> --------------------------------------------------------------------------
> > > Ce message a été envoyé depuis le webmail IMP (Internet Messaging
> Program)
> > >
> >
>
>
>
>
> --------------------------------------------------------------------------
> Ce message a été envoyé depuis le webmail IMP (Internet Messaging Program)
>

Re: [Gabedit-users] Problems installing Gabedit

[Doll, M. A. <mar...@br...>]

On Tue, Jan 25, 2011 at 4:56 PM, <all...@la...> wrote:

>
> What is the message if you type : sh
>
> sh is prbobably not installed in your system.
> If sh is not installed type, under root : cp /usr/bin/bash /usr/bin/sh
>
> ./GabeditSetup.sh
>

[root@ted apps]# sh

sh-3.1# pwd
/share/apps
sh-3.1# ./Gabeditsetup.sh
./Gabeditsetup.sh: line 33: $/share/apps/gabedit.tar.gz: No such file or
directory
./Gabeditsetup.sh: line 35: cd: $/share/apps: No such file or directory
tar: $/share/apps/gabedit.tar.gz: Cannot open: No such file or directory
tar: Error is not recoverable: exiting now
tar: Child returned status 2
tar: Error exit delayed from previous errors
/bin/rm: cannot remove `$/share/apps/gabedit.tar.gz': No such file or
directory
./Gabeditsetup.sh: line 39: $/share/apps/Gabedit/gabedit: No such file or
directory
./Gabeditsetup.sh: line 40: cd: OLDPWD not set

*****************************************
I added Gabedit to your path
     see /root/.cshrc
     and /root/.bashrc files
*****************************************


>
>
> An other solution :
> Download :
>
> http://sourceforge.net/projects/gabedit/files/gabedit/Gabedit235/Gabedit235LinuxI386Glibc23IncludingGTKLib.tar.gz
>
> and type :
> tar -zxvf Gabedit235LinuxI386Glibc23IncludingGTKLib.tar.gz
> $HOME/Gabedit/gabedit
>
>
>
>
> > On Tue, Jan 25, 2011 at 4:34 PM, <all...@la...> wrote:
> >
> > > Hello,
> > >
> > > Did you install gtk ?
> > >
> > > type  :
> > > pkg-config gtk+-2.0 --libs
> > > pkg-config gtk+-2.0 --cflags
> > >
> >
> > pkg-config gtk+-2.0 --libs
> > -L/lib64 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lm
> > -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl
> > -lglib-2.0
> >
> > [root@ted Display]# pkg-config gtk+-2.0 --cflags
> > -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include
> -I/usr/include/atk-1.0
> > -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0
> > -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2
> > -I/usr/include/libpng12
> >
> >
> > >
> > > and send me  the result .
> > >
> > > It's more simple to install Gabedit using the installer binary file :
> > > setupGabedit235wGTK.sh
> > >
> >
> > I renamed setupGabedit235wGTK.sh to Gabeditsetup.sh
> >
> > ./Gabeditsetup.sh
> > ./Gabeditsetup.sh: line 33: $/share/apps/gabedit.tar.gz: No such file or
> > directory
> > ./Gabeditsetup.sh: line 35: cd: $/share/apps: No such file or directory
> > tar: $/share/apps/gabedit.tar.gz: Cannot open: No such file or directory
> > tar: Error is not recoverable: exiting now
> > tar: Child returned status 2
> > tar: Error exit delayed from previous errors
> > /bin/rm: cannot remove `$/share/apps/gabedit.tar.gz': No such file or
> > directory
> > ./Gabeditsetup.sh: line 39: $/share/apps/Gabedit/gabedit: No such file or
> > directory
> > ./Gabeditsetup.sh: line 40: cd: OLDPWD not set
> >
> > *****************************************
> > I added Gabedit to your path
> >      see /root/.cshrc
> >      and /root/.bashrc files
> > *****************************************
> >
> >
> > >
> > > Regards,
> > >
> > >
> > >
> > > > I need to install Gabedit on our linux server for a class that will
> be
> > > using
> > > > it next week.  Our linux server is the head of a computer cluster
> running
> > > > ROCKS.
> > > >
> > > > I have downloaded GabeditSrc235 to the server.
> > > > This a 64 bit Centos system with glibc-2.5-18.el5_1.1
> > > > I have installed  gtkglext-1.0.6-1.el5.rf.x86_64.rpm
> > > >
> > > > I have built gtkglext-1.2.0 in /share/apps.
> > > >
> > > > I copied CONFIG.unix from platforms to CONFIG in the top directory of
> the
> > > > GabediSrc235 directory.
> > > > I modified the PKG_CONFIG _PATH definition in CONFIG to
> > > >
> > > > PKG_CONFIG_PATH  =
> > > > "/usr/lib64:/share/apps/gtkglext-1.2.0/:share/apps/lib/pkgconfig"
> > > >
> > > > to eliminate the problem in finding gdkglext-1.0.pc.
> > > >
> > > > In src/Display/GLArea.c, I had to add the full path to gtkgl.h
> > > >
> > > > #include </share/apps/gtkglext-1.2.0/gtk/gtkgl.h>
> > > >
> > > > I am still getting multiple errors:
> > > >
> > > > In file included from GLArea.c:23:
> > > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:22:23: error: gdk/gdkgl.h: No
> such
> > > > file or directory
> > > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:24:27: error: gtk/gtkgldefs.h:
> No
> > > > such file or directory
> > > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:25:30: error:
> gtk/gtkglversion.h:
> > > No
> > > > such file or directory
> > > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:26:27: error: gtk/gtkglinit.h:
> No
> > > > such file or directory
> > > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:27:29: error:
> gtk/gtkglwidget.h:
> > > No
> > > > such file or directory
> > > > GLArea.c: In function 'init':
> > > > GLArea.c:772: error: 'GdkGLContext' undeclared (first use in this
> > > function)
> > > >
> > > > although
> > > >
> > > > printenv PATH
> > > >
> > >
> > >
> >
>
> /share/apps/gtkglext-1.2.0/gtk:/share/apps/bin:/share/apps/pgi/linux86-64/7.1-1/bin:/opt/gridengine/bin/lx26-amd64:/usr/kerberos/sbin:/usr/kerberos/bin:/opt/gridengine/bin/lx26-amd64:/usr/java/jdk1.5.0_10/bin:/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/opt/maven/bin:/opt/openmpi/bin/:/opt/rocks/bin:/opt/rocks/sbin:/root/bin:/state/partition1/apps/gtkglext-1.2.0/gtk
> > > >
> > > > printenv LD_LIBRARY_PATH
> > > >
> > >
> > >
> >
>
> /opt/gridengine/lib/lx26-amd64:/opt/gridengine/lib/lx26-amd64:/share/apps/lib:/usr/lib64:/usr/lib:/share/apps/gtkglext-1.2.0/gtk
> > > >
> > > > How can I get this to compile correctly?
> > > >
> > > > Thanks for your help.
> > > >
> > >
> > >
> > >
> > >
> > >
> --------------------------------------------------------------------------
> > > Ce message a été envoyé depuis le webmail IMP (Internet Messaging
> Program)
> > >
> >
>
>
>
>
> --------------------------------------------------------------------------
> Ce message a été envoyé depuis le webmail IMP (Internet Messaging Program)
>

Re: [Gabedit-users] Problems installing Gabedit

[Doll, M. A. <mar...@br...>]

On Tue, Jan 25, 2011 at 4:34 PM, <all...@la...> wrote:

> Hello,
>
> Did you install gtk ?
>
> type  :
> pkg-config gtk+-2.0 --libs
> pkg-config gtk+-2.0 --cflags
>

pkg-config gtk+-2.0 --libs
-L/lib64 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lm
-lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl
-lglib-2.0

[root@ted Display]# pkg-config gtk+-2.0 --cflags
-I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0
-I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0
-I/usr/lib64/glib-2.0/include -I/usr/include/freetype2
-I/usr/include/libpng12


>
> and send me  the result .
>
> It's more simple to install Gabedit using the installer binary file :
> setupGabedit235wGTK.sh
>

I renamed setupGabedit235wGTK.sh to Gabeditsetup.sh

./Gabeditsetup.sh
./Gabeditsetup.sh: line 33: $/share/apps/gabedit.tar.gz: No such file or
directory
./Gabeditsetup.sh: line 35: cd: $/share/apps: No such file or directory
tar: $/share/apps/gabedit.tar.gz: Cannot open: No such file or directory
tar: Error is not recoverable: exiting now
tar: Child returned status 2
tar: Error exit delayed from previous errors
/bin/rm: cannot remove `$/share/apps/gabedit.tar.gz': No such file or
directory
./Gabeditsetup.sh: line 39: $/share/apps/Gabedit/gabedit: No such file or
directory
./Gabeditsetup.sh: line 40: cd: OLDPWD not set

*****************************************
I added Gabedit to your path
     see /root/.cshrc
     and /root/.bashrc files
*****************************************


>
> Regards,
>
>
>
> > I need to install Gabedit on our linux server for a class that will be
> using
> > it next week.  Our linux server is the head of a computer cluster running
> > ROCKS.
> >
> > I have downloaded GabeditSrc235 to the server.
> > This a 64 bit Centos system with glibc-2.5-18.el5_1.1
> > I have installed  gtkglext-1.0.6-1.el5.rf.x86_64.rpm
> >
> > I have built gtkglext-1.2.0 in /share/apps.
> >
> > I copied CONFIG.unix from platforms to CONFIG in the top directory of the
> > GabediSrc235 directory.
> > I modified the PKG_CONFIG _PATH definition in CONFIG to
> >
> > PKG_CONFIG_PATH  =
> > "/usr/lib64:/share/apps/gtkglext-1.2.0/:share/apps/lib/pkgconfig"
> >
> > to eliminate the problem in finding gdkglext-1.0.pc.
> >
> > In src/Display/GLArea.c, I had to add the full path to gtkgl.h
> >
> > #include </share/apps/gtkglext-1.2.0/gtk/gtkgl.h>
> >
> > I am still getting multiple errors:
> >
> > In file included from GLArea.c:23:
> > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:22:23: error: gdk/gdkgl.h: No such
> > file or directory
> > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:24:27: error: gtk/gtkgldefs.h: No
> > such file or directory
> > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:25:30: error: gtk/gtkglversion.h:
> No
> > such file or directory
> > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:26:27: error: gtk/gtkglinit.h: No
> > such file or directory
> > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:27:29: error: gtk/gtkglwidget.h:
> No
> > such file or directory
> > GLArea.c: In function 'init':
> > GLArea.c:772: error: 'GdkGLContext' undeclared (first use in this
> function)
> >
> > although
> >
> > printenv PATH
> >
>
> /share/apps/gtkglext-1.2.0/gtk:/share/apps/bin:/share/apps/pgi/linux86-64/7.1-1/bin:/opt/gridengine/bin/lx26-amd64:/usr/kerberos/sbin:/usr/kerberos/bin:/opt/gridengine/bin/lx26-amd64:/usr/java/jdk1.5.0_10/bin:/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/opt/maven/bin:/opt/openmpi/bin/:/opt/rocks/bin:/opt/rocks/sbin:/root/bin:/state/partition1/apps/gtkglext-1.2.0/gtk
> >
> > printenv LD_LIBRARY_PATH
> >
>
> /opt/gridengine/lib/lx26-amd64:/opt/gridengine/lib/lx26-amd64:/share/apps/lib:/usr/lib64:/usr/lib:/share/apps/gtkglext-1.2.0/gtk
> >
> > How can I get this to compile correctly?
> >
> > Thanks for your help.
> >
>
>
>
>
> --------------------------------------------------------------------------
> Ce message a été envoyé depuis le webmail IMP (Internet Messaging Program)
>

Re: [Gabedit-users] Problems installing Gabedit

[<all...@la...>]

Hello,

Did you install gtk ?

type  :
pkg-config gtk+-2.0 --libs
pkg-config gtk+-2.0 --cflags

and send me  the result .

It's more simple to install Gabedit using the installer binary file :
setupGabedit235wGTK.sh

Regards,



> I need to install Gabedit on our linux server for a class that will be using
> it next week.  Our linux server is the head of a computer cluster running
> ROCKS.
>
> I have downloaded GabeditSrc235 to the server.
> This a 64 bit Centos system with glibc-2.5-18.el5_1.1
> I have installed  gtkglext-1.0.6-1.el5.rf.x86_64.rpm
>
> I have built gtkglext-1.2.0 in /share/apps.
>
> I copied CONFIG.unix from platforms to CONFIG in the top directory of the
> GabediSrc235 directory.
> I modified the PKG_CONFIG _PATH definition in CONFIG to
>
> PKG_CONFIG_PATH  =
> "/usr/lib64:/share/apps/gtkglext-1.2.0/:share/apps/lib/pkgconfig"
>
> to eliminate the problem in finding gdkglext-1.0.pc.
>
> In src/Display/GLArea.c, I had to add the full path to gtkgl.h
>
> #include </share/apps/gtkglext-1.2.0/gtk/gtkgl.h>
>
> I am still getting multiple errors:
>
> In file included from GLArea.c:23:
> /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:22:23: error: gdk/gdkgl.h: No such
> file or directory
> /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:24:27: error: gtk/gtkgldefs.h: No
> such file or directory
> /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:25:30: error: gtk/gtkglversion.h: No
> such file or directory
> /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:26:27: error: gtk/gtkglinit.h: No
> such file or directory
> /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:27:29: error: gtk/gtkglwidget.h: No
> such file or directory
> GLArea.c: In function 'init':
> GLArea.c:772: error: 'GdkGLContext' undeclared (first use in this function)
>
> although
>
> printenv PATH
>
/share/apps/gtkglext-1.2.0/gtk:/share/apps/bin:/share/apps/pgi/linux86-64/7.1-1/bin:/opt/gridengine/bin/lx26-amd64:/usr/kerberos/sbin:/usr/kerberos/bin:/opt/gridengine/bin/lx26-amd64:/usr/java/jdk1.5.0_10/bin:/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/opt/maven/bin:/opt/openmpi/bin/:/opt/rocks/bin:/opt/rocks/sbin:/root/bin:/state/partition1/apps/gtkglext-1.2.0/gtk
>
> printenv LD_LIBRARY_PATH
>
/opt/gridengine/lib/lx26-amd64:/opt/gridengine/lib/lx26-amd64:/share/apps/lib:/usr/lib64:/usr/lib:/share/apps/gtkglext-1.2.0/gtk
>
> How can I get this to compile correctly?
>
> Thanks for your help.
>




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Re: [Gabedit-users] Problems installing Gabedit

[<all...@la...>]

What is the message if you type : sh

sh is prbobably not installed in your system.
If sh is not installed type, under root : cp /usr/bin/bash /usr/bin/sh

./GabeditSetup.sh


An other solution :
Download :
http://sourceforge.net/projects/gabedit/files/gabedit/Gabedit235/Gabedit235LinuxI386Glibc23IncludingGTKLib.tar.gz

and type :
tar -zxvf Gabedit235LinuxI386Glibc23IncludingGTKLib.tar.gz
$HOME/Gabedit/gabedit




> On Tue, Jan 25, 2011 at 4:34 PM, <all...@la...> wrote:
>
> > Hello,
> >
> > Did you install gtk ?
> >
> > type  :
> > pkg-config gtk+-2.0 --libs
> > pkg-config gtk+-2.0 --cflags
> >
>
> pkg-config gtk+-2.0 --libs
> -L/lib64 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lm
> -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl
> -lglib-2.0
>
> [root@ted Display]# pkg-config gtk+-2.0 --cflags
> -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0
> -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/libpng12
>
>
> >
> > and send me  the result .
> >
> > It's more simple to install Gabedit using the installer binary file :
> > setupGabedit235wGTK.sh
> >
>
> I renamed setupGabedit235wGTK.sh to Gabeditsetup.sh
>
> ./Gabeditsetup.sh
> ./Gabeditsetup.sh: line 33: $/share/apps/gabedit.tar.gz: No such file or
> directory
> ./Gabeditsetup.sh: line 35: cd: $/share/apps: No such file or directory
> tar: $/share/apps/gabedit.tar.gz: Cannot open: No such file or directory
> tar: Error is not recoverable: exiting now
> tar: Child returned status 2
> tar: Error exit delayed from previous errors
> /bin/rm: cannot remove `$/share/apps/gabedit.tar.gz': No such file or
> directory
> ./Gabeditsetup.sh: line 39: $/share/apps/Gabedit/gabedit: No such file or
> directory
> ./Gabeditsetup.sh: line 40: cd: OLDPWD not set
>
> *****************************************
> I added Gabedit to your path
>      see /root/.cshrc
>      and /root/.bashrc files
> *****************************************
>
>
> >
> > Regards,
> >
> >
> >
> > > I need to install Gabedit on our linux server for a class that will be
> > using
> > > it next week.  Our linux server is the head of a computer cluster running
> > > ROCKS.
> > >
> > > I have downloaded GabeditSrc235 to the server.
> > > This a 64 bit Centos system with glibc-2.5-18.el5_1.1
> > > I have installed  gtkglext-1.0.6-1.el5.rf.x86_64.rpm
> > >
> > > I have built gtkglext-1.2.0 in /share/apps.
> > >
> > > I copied CONFIG.unix from platforms to CONFIG in the top directory of the
> > > GabediSrc235 directory.
> > > I modified the PKG_CONFIG _PATH definition in CONFIG to
> > >
> > > PKG_CONFIG_PATH  =
> > > "/usr/lib64:/share/apps/gtkglext-1.2.0/:share/apps/lib/pkgconfig"
> > >
> > > to eliminate the problem in finding gdkglext-1.0.pc.
> > >
> > > In src/Display/GLArea.c, I had to add the full path to gtkgl.h
> > >
> > > #include </share/apps/gtkglext-1.2.0/gtk/gtkgl.h>
> > >
> > > I am still getting multiple errors:
> > >
> > > In file included from GLArea.c:23:
> > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:22:23: error: gdk/gdkgl.h: No such
> > > file or directory
> > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:24:27: error: gtk/gtkgldefs.h: No
> > > such file or directory
> > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:25:30: error: gtk/gtkglversion.h:
> > No
> > > such file or directory
> > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:26:27: error: gtk/gtkglinit.h: No
> > > such file or directory
> > > /share/apps/gtkglext-1.2.0/gtk/gtkgl.h:27:29: error: gtk/gtkglwidget.h:
> > No
> > > such file or directory
> > > GLArea.c: In function 'init':
> > > GLArea.c:772: error: 'GdkGLContext' undeclared (first use in this
> > function)
> > >
> > > although
> > >
> > > printenv PATH
> > >
> >
> >
>
/share/apps/gtkglext-1.2.0/gtk:/share/apps/bin:/share/apps/pgi/linux86-64/7.1-1/bin:/opt/gridengine/bin/lx26-amd64:/usr/kerberos/sbin:/usr/kerberos/bin:/opt/gridengine/bin/lx26-amd64:/usr/java/jdk1.5.0_10/bin:/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/opt/maven/bin:/opt/openmpi/bin/:/opt/rocks/bin:/opt/rocks/sbin:/root/bin:/state/partition1/apps/gtkglext-1.2.0/gtk
> > >
> > > printenv LD_LIBRARY_PATH
> > >
> >
> >
>
/opt/gridengine/lib/lx26-amd64:/opt/gridengine/lib/lx26-amd64:/share/apps/lib:/usr/lib64:/usr/lib:/share/apps/gtkglext-1.2.0/gtk
> > >
> > > How can I get this to compile correctly?
> > >
> > > Thanks for your help.
> > >
> >
> >
> >
> >
> > --------------------------------------------------------------------------
> > Ce message a été envoyé depuis le webmail IMP (Internet Messaging Program)
> >
>




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[Gabedit-users] Problems installing Gabedit

[Doll, M. A. <mar...@br...>]

I need to install Gabedit on our linux server for a class that will be using
it next week.  Our linux server is the head of a computer cluster running
ROCKS.

I have downloaded GabeditSrc235 to the server.
This a 64 bit Centos system with glibc-2.5-18.el5_1.1
I have installed  gtkglext-1.0.6-1.el5.rf.x86_64.rpm

I have built gtkglext-1.2.0 in /share/apps.

I copied CONFIG.unix from platforms to CONFIG in the top directory of the
GabediSrc235 directory.
I modified the PKG_CONFIG _PATH definition in CONFIG to

PKG_CONFIG_PATH  =
"/usr/lib64:/share/apps/gtkglext-1.2.0/:share/apps/lib/pkgconfig"

to eliminate the problem in finding gdkglext-1.0.pc.

In src/Display/GLArea.c, I had to add the full path to gtkgl.h

#include </share/apps/gtkglext-1.2.0/gtk/gtkgl.h>

I am still getting multiple errors:

In file included from GLArea.c:23:
/share/apps/gtkglext-1.2.0/gtk/gtkgl.h:22:23: error: gdk/gdkgl.h: No such
file or directory
/share/apps/gtkglext-1.2.0/gtk/gtkgl.h:24:27: error: gtk/gtkgldefs.h: No
such file or directory
/share/apps/gtkglext-1.2.0/gtk/gtkgl.h:25:30: error: gtk/gtkglversion.h: No
such file or directory
/share/apps/gtkglext-1.2.0/gtk/gtkgl.h:26:27: error: gtk/gtkglinit.h: No
such file or directory
/share/apps/gtkglext-1.2.0/gtk/gtkgl.h:27:29: error: gtk/gtkglwidget.h: No
such file or directory
GLArea.c: In function 'init':
GLArea.c:772: error: 'GdkGLContext' undeclared (first use in this function)

although

printenv PATH
/share/apps/gtkglext-1.2.0/gtk:/share/apps/bin:/share/apps/pgi/linux86-64/7.1-1/bin:/opt/gridengine/bin/lx26-amd64:/usr/kerberos/sbin:/usr/kerberos/bin:/opt/gridengine/bin/lx26-amd64:/usr/java/jdk1.5.0_10/bin:/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/opt/maven/bin:/opt/openmpi/bin/:/opt/rocks/bin:/opt/rocks/sbin:/root/bin:/state/partition1/apps/gtkglext-1.2.0/gtk

printenv LD_LIBRARY_PATH
/opt/gridengine/lib/lx26-amd64:/opt/gridengine/lib/lx26-amd64:/share/apps/lib:/usr/lib64:/usr/lib:/share/apps/gtkglext-1.2.0/gtk

How can I get this to compile correctly?

Thanks for your help.

[Gabedit-users] Compiling Gabedit under FreeBSD/amd64

[Eduardo <ed...@uf...>]

Dear Users and Developers

I am trying to compile Gabedit-2.3.0 under a FreeBSD-8.1-Release/amd64 
plataform:

1) I copied plattaforms/ CONFIG.linux to working directory as CONFIG and 
type gmake -f Makefile (or simply gmake), then I got the error:

make: illegal option -- -
usage: make [-BPSXeiknpqrstv] [-C directory] [-D variable]
     [-d flags] [-E variable] [-f makefile] [-I directory]
     [-j max_jobs] [-m directory] [-V variable]
     [variable=value] [target ...]
gmake: *** [src/OpenGL] Error 2

2) When I tried make (or make -f Makefile), I got:

"Makefile", line 1: Could not find CONFIG
"Makefile", line 28: Unassociated shell command "$(COMMON) $(CURVE) 
$(FILES) $(GAMESS) $(GAUSS) $(GEOM) $(MODELS) \ "
"Makefile", line 29: Unassociated shell command "$(MOLCAS) $(MOLPRO) 
$(MOPAC) $(MPQC) $(MULTIGRID) $(NETWORK) \ "
"Makefile", line 30: Unassociated shell command "$(OPENGL) $(FIREFLY) 
$(ORCA) $(QCHEM) $(SEMIEMP) $(UTILS) \ "
"Makefile", line 31: Unassociated shell command "$(SYMMETRY) $(VIBCORR) 
$(IDC) "
"Makefile", line 34: Unassociated shell command "src/OpenGL src/Common 
src/Files src/Gaussian \ "
"Makefile", line 35: Missing dependency operator
"Makefile", line 40: Missing dependency operator
"Makefile", line 44: Missing dependency operator
"Makefile", line 46: Missing dependency operator
"Makefile", line 48: Missing dependency operator
"Makefile", line 52: Missing dependency operator
"Makefile", line 54: Missing dependency operator
"Makefile", line 63: warning: duplicate script for target "\" ignored
make: fatal errors encountered -- cannot continue

(In the first line, there is a error "Could not found CONFIG", but it is 
certainly there, and do not solve to write the complete path of CONFIG).

Please, could you give some direction to solve this problem?

Thank you in advance

Yours

Eduardo

-- 
Eduardo Lemos de Sa
Associated Professor at Chemistry Department
Universidade Federal do Parana
Dep. Quimica, P. Box 19081, 81531-990 Curitiba PR / Brazil
phone: +55(41)33613300
fax  : +55(41)33613186

[Gabedit-users] add the gamess directory to your path .bashrc

[Taebum L. <tz...@au...>]

Hi,

I install Gabedit on my ubuntu linux. When I submit gamess-us job through the run window in Gabedit, I get the following error message in log file. 

Sorry, the Gamess directory is not in you path
You should add the gamess directory to you path (.login or .cshrc or .basshrc)

My .bashrc has environment like;


PATH="$PATH:/usr/local/cuda/lib64:/usr/local/cuda/lib:/opt/pgi/linux86-64/8.0/bin:/usr/local/bin/gamess"
export PATH

What can I do more for it? Any suggestion?

Many Thanks,
TaeBum

[Gabedit-users] add the gamess directory to your path

[TAE B. L. <tae...@gm...>]

Hi,

I install Gabedit on my ubuntu linux. When I submit gamess-us job through
the run window in Gabedit, I get the following error message in log file.

Sorry, the Gamess directory is not in you path
You should add the gamess directory to you path (.login or .cshrc or
.basshrc)

My .bashrc has environment like;


PATH="$PATH:/usr/local/cuda/lib64:/usr/local/cuda/lib:/opt/pgi/linux86-64/8.0/bin:/usr/local/bin/gamess"
export PATH

What can I do more for it? Any suggestion?

Many Thanks,
TaeBum
########################################
TAE BUM LEE
Dept. Chem. & Biochem
Auburn Univ. AL. 36849
TEL.: 334-844-6912
e-mail: tae...@gm...
########################################

Re: [Gabedit-users] Installation of Gabedit on suse 11.2

[<all...@la...>]

Hello,


> Dear Sir,
>
> Please help me in installation of gabedit 2.3.0 on linux suse 11.2
> I have done the following steps
> gunzip  GabeditScr230.tar.gz
>          tar  -xvf   GabeditScr230.tar
>          cd  GabeditScr230
> after this i could not understand how to proceed further
>  cp CONFIG.linux CONFIG

   Try : cp platforms/CONFIG.linux CONFIG
         make
         ./gabedit

You can also use the precompiled binary file from :
http://prdownloads.sourceforge.net/gabedit/setupGabedit230wGTK.sh?download
After download type :
chmod +x setupGabedit230wGTK.sh
./setupGabedit230wGTK.sh


Regards,


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[Gabedit-users] Installation of Gabedit on suse 11.2

[RITESH R. <rit...@gm...>]

Dear Sir,

Please help me in installation of gabedit 2.3.0 on linux suse 11.2
I have done the following steps
gunzip  GabeditScr230.tar.gz
         tar  -xvf   GabeditScr230.tar
         cd  GabeditScr230
after this i could not understand how to proceed further
 cp CONFIG.linux CONFIG
         make
         ./gabedit
please clearify the above steps

thanks with regards

-- 
Ritesh Ruhela

[Gabedit-users] New version of Gabedit

[Allouche Abdul-r. <all...@la...>]

Dear Gabedit users,

Gabedit version 2.3.0 is available...

You will find it on :
http://sites.google.com/site/allouchear/Home/gabedit/download

Here is a list of the significant changes between 2.3.0 and 2.2.6:

    * Minor bugs were fixed (The label bug under XYPlot window,with
      gtk2.18 has been fixed)
    * Gabedit can now read  orbitals, geometry and normal modes from a
      fchk Gaussian file.
    * It can read orbitals from the new mopac aux file format (including
      the compressed format).
    * Several new options in XYPlot and ContoursPlot windows (insert
      text, line, arrow, images, new themes...)
    * The bond lengths can be fixed during a MD simulation.
    * Partial optimization is now possible with the MM potential.
    * Computing of spatial overlap matrix <ii|delra(ri,rj)|jj>.
    * Implementation of a tool to predict the masses and abundances of
      the isotopes for a given molecule. Atomic weights and isotopic
      compositions for All Elements are taken from
      http://physics.nist.gov/PhysRefData/Compositions/
    * Implementation of a tool to compute the electrophilic,
      nucleophilic and radical susceptibilities for a molecule.


If you find any bugs or have any problems,
please contact me ( allouchear at users.sourceforge.net).

IF YOU RECEIVE THIS E-MAIL MORE THAN ONCE, PLEASE ACCEPT MY APOLOGIES

Best regards

-- 
Abdul-Rahman ALLOUCHE
Email : all...@la...
Web : http://sites.google.com/site/allouchear/