From: gilleain t. <gil...@gm...> - 2014-01-24 15:42:33
|
Hi, To get a class in a cdk.module, I can just use a maven module, right? So if I want ISimpleChemObjectReader which is in cdk.io, I can use : <dependency> <groupId>org.openscience.cdk</groupId> <artifactId>cdk-io</artifactId> <version>1.5.3+</version> </dependency> This does not seem to work for me, but maybe I am doing something wrong. The code is : https://github.com/gilleain/cdk-tools Any ideas? Perhaps I am doing something quite foolish here... thankyou, gilleain |
From: John M. <joh...@gm...> - 2014-01-24 15:48:42
|
So that should work - but probably something funny with the local repo. The + was my own branch when I needed patches that weren’t yet applied :-)… try using 1.5.4. Or alternatively, RELEASE gives you the latest release version. J On 24 Jan 2014, at 15:42, gilleain torrance <gil...@gm...> wrote: > Hi, > > To get a class in a cdk.module, I can just use a maven module, right? > So if I want ISimpleChemObjectReader which is in cdk.io, I can use : > > <dependency> > <groupId>org.openscience.cdk</groupId> > <artifactId>cdk-io</artifactId> > <version>1.5.3+</version> > </dependency> > > This does not seem to work for me, but maybe I am doing something > wrong. The code is : > > https://github.com/gilleain/cdk-tools > > Any ideas? Perhaps I am doing something quite foolish here... > > thankyou, > > gilleain > > ------------------------------------------------------------------------------ > CenturyLink Cloud: The Leader in Enterprise Cloud Services. > Learn Why More Businesses Are Choosing CenturyLink Cloud For > Critical Workloads, Development Environments & Everything In Between. > Get a Quote or Start a Free Trial Today. > http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk > _______________________________________________ > Cdk-devel mailing list > Cdk...@li... > https://lists.sourceforge.net/lists/listinfo/cdk-devel |
From: gilleain t. <gil...@gm...> - 2014-01-24 15:57:11
|
Ah right. That works for "mvn compile" - just eclipse screwed up now. thanks! gilleain On 1/24/14, John May <joh...@gm...> wrote: > So that should work - but probably something funny with the local repo. > The + was my own branch when I needed patches that weren’t yet applied :-)… > try using 1.5.4. > > Or alternatively, RELEASE gives you the latest release version. > > J > > On 24 Jan 2014, at 15:42, gilleain torrance <gil...@gm...> > wrote: > >> Hi, >> >> To get a class in a cdk.module, I can just use a maven module, right? >> So if I want ISimpleChemObjectReader which is in cdk.io, I can use : >> >> <dependency> >> <groupId>org.openscience.cdk</groupId> >> <artifactId>cdk-io</artifactId> >> <version>1.5.3+</version> >> </dependency> >> >> This does not seem to work for me, but maybe I am doing something >> wrong. The code is : >> >> https://github.com/gilleain/cdk-tools >> >> Any ideas? Perhaps I am doing something quite foolish here... >> >> thankyou, >> >> gilleain >> >> ------------------------------------------------------------------------------ >> CenturyLink Cloud: The Leader in Enterprise Cloud Services. >> Learn Why More Businesses Are Choosing CenturyLink Cloud For >> Critical Workloads, Development Environments & Everything In Between. >> Get a Quote or Start a Free Trial Today. >> http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk >> _______________________________________________ >> Cdk-devel mailing list >> Cdk...@li... >> https://lists.sourceforge.net/lists/listinfo/cdk-devel > > > ------------------------------------------------------------------------------ > CenturyLink Cloud: The Leader in Enterprise Cloud Services. > Learn Why More Businesses Are Choosing CenturyLink Cloud For > Critical Workloads, Development Environments & Everything In Between. > Get a Quote or Start a Free Trial Today. > http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk > _______________________________________________ > Cdk-devel mailing list > Cdk...@li... > https://lists.sourceforge.net/lists/listinfo/cdk-devel > |
From: John M. <joh...@gm...> - 2014-01-24 15:52:51
|
Hmm no there’s something else wrong - two secs let me load it up in intellij. J On 24 Jan 2014, at 15:48, John May <joh...@gm...> wrote: > So that should work - but probably something funny with the local repo. > The + was my own branch when I needed patches that weren’t yet applied :-)… try using 1.5.4. > > Or alternatively, RELEASE gives you the latest release version. > > J > > On 24 Jan 2014, at 15:42, gilleain torrance <gil...@gm...> wrote: > >> Hi, >> >> To get a class in a cdk.module, I can just use a maven module, right? >> So if I want ISimpleChemObjectReader which is in cdk.io, I can use : >> >> <dependency> >> <groupId>org.openscience.cdk</groupId> >> <artifactId>cdk-io</artifactId> >> <version>1.5.3+</version> >> </dependency> >> >> This does not seem to work for me, but maybe I am doing something >> wrong. The code is : >> >> https://github.com/gilleain/cdk-tools >> >> Any ideas? Perhaps I am doing something quite foolish here... >> >> thankyou, >> >> gilleain >> >> ------------------------------------------------------------------------------ >> CenturyLink Cloud: The Leader in Enterprise Cloud Services. >> Learn Why More Businesses Are Choosing CenturyLink Cloud For >> Critical Workloads, Development Environments & Everything In Between. >> Get a Quote or Start a Free Trial Today. >> http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk >> _______________________________________________ >> Cdk-devel mailing list >> Cdk...@li... >> https://lists.sourceforge.net/lists/listinfo/cdk-devel > |
From: John M. <joh...@gm...> - 2014-01-24 15:57:59
|
App.java needs > import org.openscience.cdk.io.ISimpleChemObjectReader; Other than that it works for me - even with the 1.5.3+ dependency. I cleaned out the local repo as well and it still fetches them okay. What error do you get? J On 24 Jan 2014, at 15:52, John May <joh...@gm...> wrote: > Hmm no there’s something else wrong - two secs let me load it up in intellij. > > J > > On 24 Jan 2014, at 15:48, John May <joh...@gm...> wrote: > >> So that should work - but probably something funny with the local repo. >> The + was my own branch when I needed patches that weren’t yet applied :-)… try using 1.5.4. >> >> Or alternatively, RELEASE gives you the latest release version. >> >> J >> >> On 24 Jan 2014, at 15:42, gilleain torrance <gil...@gm...> wrote: >> >>> Hi, >>> >>> To get a class in a cdk.module, I can just use a maven module, right? >>> So if I want ISimpleChemObjectReader which is in cdk.io, I can use : >>> >>> <dependency> >>> <groupId>org.openscience.cdk</groupId> >>> <artifactId>cdk-io</artifactId> >>> <version>1.5.3+</version> >>> </dependency> >>> >>> This does not seem to work for me, but maybe I am doing something >>> wrong. The code is : >>> >>> https://github.com/gilleain/cdk-tools >>> >>> Any ideas? Perhaps I am doing something quite foolish here... >>> >>> thankyou, >>> >>> gilleain >>> >>> ------------------------------------------------------------------------------ >>> CenturyLink Cloud: The Leader in Enterprise Cloud Services. >>> Learn Why More Businesses Are Choosing CenturyLink Cloud For >>> Critical Workloads, Development Environments & Everything In Between. >>> Get a Quote or Start a Free Trial Today. >>> http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk >>> _______________________________________________ >>> Cdk-devel mailing list >>> Cdk...@li... >>> https://lists.sourceforge.net/lists/listinfo/cdk-devel >> > |
From: gilleain t. <gil...@gm...> - 2014-01-24 16:39:09
|
Yeah, it must be eclipse - command-line maven works fine. I'll try it out in a simpler test project to see if it picks up the dependencies that way. gilleain On 1/24/14, John May <joh...@gm...> wrote: > App.java needs > >> import org.openscience.cdk.io.ISimpleChemObjectReader; > > > Other than that it works for me - even with the 1.5.3+ dependency. I cleaned > out the local repo as well and it still fetches them okay. What error do you > get? > > J > > On 24 Jan 2014, at 15:52, John May <joh...@gm...> wrote: > >> Hmm no there’s something else wrong - two secs let me load it up in >> intellij. >> >> J >> >> On 24 Jan 2014, at 15:48, John May <joh...@gm...> wrote: >> >>> So that should work - but probably something funny with the local repo. >>> The + was my own branch when I needed patches that weren’t yet applied >>> :-)… try using 1.5.4. >>> >>> Or alternatively, RELEASE gives you the latest release version. >>> >>> J >>> >>> On 24 Jan 2014, at 15:42, gilleain torrance <gil...@gm...> >>> wrote: >>> >>>> Hi, >>>> >>>> To get a class in a cdk.module, I can just use a maven module, right? >>>> So if I want ISimpleChemObjectReader which is in cdk.io, I can use : >>>> >>>> <dependency> >>>> <groupId>org.openscience.cdk</groupId> >>>> <artifactId>cdk-io</artifactId> >>>> <version>1.5.3+</version> >>>> </dependency> >>>> >>>> This does not seem to work for me, but maybe I am doing something >>>> wrong. The code is : >>>> >>>> https://github.com/gilleain/cdk-tools >>>> >>>> Any ideas? Perhaps I am doing something quite foolish here... >>>> >>>> thankyou, >>>> >>>> gilleain >>>> >>>> ------------------------------------------------------------------------------ >>>> CenturyLink Cloud: The Leader in Enterprise Cloud Services. >>>> Learn Why More Businesses Are Choosing CenturyLink Cloud For >>>> Critical Workloads, Development Environments & Everything In Between. >>>> Get a Quote or Start a Free Trial Today. >>>> http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk >>>> _______________________________________________ >>>> Cdk-devel mailing list >>>> Cdk...@li... >>>> https://lists.sourceforge.net/lists/listinfo/cdk-devel >>> >> > > > ------------------------------------------------------------------------------ > CenturyLink Cloud: The Leader in Enterprise Cloud Services. > Learn Why More Businesses Are Choosing CenturyLink Cloud For > Critical Workloads, Development Environments & Everything In Between. > Get a Quote or Start a Free Trial Today. > http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk > _______________________________________________ > Cdk-devel mailing list > Cdk...@li... > https://lists.sourceforge.net/lists/listinfo/cdk-devel > |
From: John M. <joh...@gm...> - 2014-01-24 17:17:50
|
You’re using the plugin right? There’s also http://www.eclipse.org/m2e/ J On 24 Jan 2014, at 16:39, gilleain torrance <gil...@gm...> wrote: > Yeah, it must be eclipse - command-line maven works fine. I'll try it > out in a simpler test project to see if it picks up the dependencies > that way. > > gilleain > > On 1/24/14, John May <joh...@gm...> wrote: >> App.java needs >> >>> import org.openscience.cdk.io.ISimpleChemObjectReader; >> >> >> Other than that it works for me - even with the 1.5.3+ dependency. I cleaned >> out the local repo as well and it still fetches them okay. What error do you >> get? >> >> J >> >> On 24 Jan 2014, at 15:52, John May <joh...@gm...> wrote: >> >>> Hmm no there’s something else wrong - two secs let me load it up in >>> intellij. >>> >>> J >>> >>> On 24 Jan 2014, at 15:48, John May <joh...@gm...> wrote: >>> >>>> So that should work - but probably something funny with the local repo. >>>> The + was my own branch when I needed patches that weren’t yet applied >>>> :-)… try using 1.5.4. >>>> >>>> Or alternatively, RELEASE gives you the latest release version. >>>> >>>> J >>>> >>>> On 24 Jan 2014, at 15:42, gilleain torrance <gil...@gm...> >>>> wrote: >>>> >>>>> Hi, >>>>> >>>>> To get a class in a cdk.module, I can just use a maven module, right? >>>>> So if I want ISimpleChemObjectReader which is in cdk.io, I can use : >>>>> >>>>> <dependency> >>>>> <groupId>org.openscience.cdk</groupId> >>>>> <artifactId>cdk-io</artifactId> >>>>> <version>1.5.3+</version> >>>>> </dependency> >>>>> >>>>> This does not seem to work for me, but maybe I am doing something >>>>> wrong. The code is : >>>>> >>>>> https://github.com/gilleain/cdk-tools >>>>> >>>>> Any ideas? Perhaps I am doing something quite foolish here... >>>>> >>>>> thankyou, >>>>> >>>>> gilleain >>>>> >>>>> ------------------------------------------------------------------------------ >>>>> CenturyLink Cloud: The Leader in Enterprise Cloud Services. >>>>> Learn Why More Businesses Are Choosing CenturyLink Cloud For >>>>> Critical Workloads, Development Environments & Everything In Between. >>>>> Get a Quote or Start a Free Trial Today. >>>>> http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk >>>>> _______________________________________________ >>>>> Cdk-devel mailing list >>>>> Cdk...@li... >>>>> https://lists.sourceforge.net/lists/listinfo/cdk-devel >>>> >>> >> >> >> ------------------------------------------------------------------------------ >> CenturyLink Cloud: The Leader in Enterprise Cloud Services. >> Learn Why More Businesses Are Choosing CenturyLink Cloud For >> Critical Workloads, Development Environments & Everything In Between. >> Get a Quote or Start a Free Trial Today. >> http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk >> _______________________________________________ >> Cdk-devel mailing list >> Cdk...@li... >> https://lists.sourceforge.net/lists/listinfo/cdk-devel >> > > ------------------------------------------------------------------------------ > CenturyLink Cloud: The Leader in Enterprise Cloud Services. > Learn Why More Businesses Are Choosing CenturyLink Cloud For > Critical Workloads, Development Environments & Everything In Between. > Get a Quote or Start a Free Trial Today. > http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk > _______________________________________________ > Cdk-devel mailing list > Cdk...@li... > https://lists.sourceforge.net/lists/listinfo/cdk-devel |