Thread: [Apbs-users] 1AIK pentamer structure
Biomolecular electrostatics software
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From: Onur A. <onu...@ha...> - 2010-09-28 08:40:02
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Dear users<br _moz_dirty="" /> I am Onur Alten from Hacettepe University. I have used 1AIK Pdb structure for docking. I have used biological unit of 1AIK.<br _moz_dirty="" /> 1AIK structure contains 3 N -helix and 3 C-helix. It is a hexamer.<br _moz_dirty="" /> Hydrophobic pocket of 1AIK is important for docking area. To expose this pocket ,I remove one of the C helices. After than i upload this pentamer structures to pdb2pqr server and it gives me a pqr file. But this pqr file contains only one N -helix and one C-helix. And I can't see the pentamer molecule. What can I do? Where is the pentamer structure? Pentamer structure is necessarily for docking . |