Thread: [apbs-users] Visualizing field lines.
Biomolecular electrostatics software
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From: Jimin P. <whi...@gm...> - 2012-03-28 01:56:04
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Hello. I tried to calculate electrostatic potentials and visualize field lines in VMD and I just followed the tutorials at APBS website. But I don't know how to set ELEC values in case of other proteins. Do you have some manuals for visualizing field lines? And I want to know what do lines and lines' color mean. |
From: Baker, N. <Nat...@pn...> - 2012-03-29 02:56:45
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Hi Jimin -- I'm sorry but I need a bit more detail. What "elec values" information are you hoping to obtain? In general, this information is specific to each system. Depending on how you render the field lines, the colors are proportional to the local potential or field at each point. Displaying a color bar in the plot can be helpful for interpreting the values. Thanks, __________________________________________________ Nathan Baker Pacific Northwest National Laboratory Tel: +1-509-375-3997 http://nabaker.me -----Original Message----- From: Jimin Park [mailto:whi...@gm...] Sent: Tuesday, March 27, 2012 6:56 PM To: apb...@li... Subject: [apbs-users] Visualizing field lines. Hello. I tried to calculate electrostatic potentials and visualize field lines in VMD and I just followed the tutorials at APBS website. But I don't know how to set ELEC values in case of other proteins. Do you have some manuals for visualizing field lines? And I want to know what do lines and lines' color mean. ------------------------------------------------------------------------------ This SF email is sponsosred by: Try Windows Azure free for 90 days Click Here http://p.sf.net/sfu/sfd2d-msazure _______________________________________________ apbs-users mailing list apb...@li... https://lists.sourceforge.net/lists/listinfo/apbs-users |