Thread: [apbs-users] origin coordinates in a .dx file
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From: Francois B. <ber...@ri...> - 2011-12-14 07:47:13
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Hello, When I read a .dx file generated by APBS, is the origin located at the center of the grid or at one of its corners? Sorry for the stupid question, I read the doc about the .dx file format but the answer is not obvious to me. Regards, Francois. |
From: Keith C. <km...@pi...> - 2011-12-14 15:36:52
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Hi Francois, The origin is written in the header of the dx file -- I think it is the 6th line -- so this could be tested pretty quickly. Keith On Wed, Dec 14, 2011 at 2:22 AM, Francois Berenger <ber...@ri...> wrote: > Hello, > > When I read a .dx file generated by APBS, > is the origin located at the center of the grid > or at one of its corners? > > Sorry for the stupid question, I read the doc about > the .dx file format but the answer is not obvious to me. > > Regards, > Francois. > > ------------------------------------------------------------------------------ > Cloud Computing - Latest Buzzword or a Glimpse of the Future? > This paper surveys cloud computing today: What are the benefits? > Why are businesses embracing it? What are its payoffs and pitfalls? > http://www.accelacomm.com/jaw/sdnl/114/51425149/ > _______________________________________________ > apbs-users mailing list > apb...@li... > https://lists.sourceforge.net/lists/listinfo/apbs-users -- Keith M. Callenberg PhD student, Computational Biology Carnegie Mellon-University of Pittsburgh kmc112@{pitt,cmu}.edu http://www.pitt.edu/~kmc112/ |
From: Baker, N. <Nat...@pn...> - 2011-12-14 15:50:13
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Hi Francois -- The origin is the location of the lower corner: http://www.poissonboltzmann.org/file-formats/mesh-and-data-formats/opendx-scalar-data Thanks, __________________________________________________ Nathan Baker Pacific Northwest National Laboratory Tel: 509-375-3997 http://nabaker.me -----Original Message----- From: Francois Berenger [mailto:ber...@ri...] Sent: Tuesday, December 13, 2011 11:23 PM To: apb...@li... Subject: [apbs-users] origin coordinates in a .dx file Hello, When I read a .dx file generated by APBS, is the origin located at the center of the grid or at one of its corners? Sorry for the stupid question, I read the doc about the .dx file format but the answer is not obvious to me. Regards, Francois. ------------------------------------------------------------------------------ Cloud Computing - Latest Buzzword or a Glimpse of the Future? This paper surveys cloud computing today: What are the benefits? Why are businesses embracing it? What are its payoffs and pitfalls? http://www.accelacomm.com/jaw/sdnl/114/51425149/ _______________________________________________ apbs-users mailing list apb...@li... https://lists.sourceforge.net/lists/listinfo/apbs-users |
From: Baker, N. <Nat...@pn...> - 2012-03-09 14:45:53
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Hello – Can you please provide the numbers that describe the differences you’re observing? Thanks, __________________________________________________ Nathan Baker Pacific Northwest National Laboratory Tel: +1-509-375-3997 http://nabaker.me<http://nabaker.me/> From: Abhinav kaushik [mailto:abh...@gm...] Sent: Thursday, March 08, 2012 10:45 PM To: apb...@go... Cc: apb...@li... Subject: Re: [apbs-users] origin coordinates in a .dx file hello Nathan, origin must be located on the lower corner but the coordinates mentioned in the origin tag of .dx file does not matches with those mentioned in "io.mc" file. thank you ... Abhinav kaushik Research fellow, International center for genetic engg. and biotechnology, New Delhi, India On Wednesday, 14 December 2011 21:20:03 UTC+5:30, Baker, Nathan wrote: Hi Francois -- The origin is the location of the lower corner: http://www.poissonboltzmann.org/file-formats/mesh-and-data-formats/opendx-scalar-data Thanks, __________________________________________________ Nathan Baker Pacific Northwest National Laboratory Tel: 509-375-3997 http://nabaker.me -----Original Message----- From: Francois Berenger [mailto:ber...@ri...<mailto:ber...@ri...>] Sent: Tuesday, December 13, 2011 11:23 PM To: apb...@li...<mailto:apb...@li...> Subject: [apbs-users] origin coordinates in a .dx file Hello, When I read a .dx file generated by APBS, is the origin located at the center of the grid or at one of its corners? Sorry for the stupid question, I read the doc about the .dx file format but the answer is not obvious to me. Regards, Francois. ------------------------------------------------------------------------------ Cloud Computing - Latest Buzzword or a Glimpse of the Future? This paper surveys cloud computing today: What are the benefits? Why are businesses embracing it? What are its payoffs and pitfalls? http://www.accelacomm.com/jaw/sdnl/114/51425149/ _______________________________________________ apbs-users mailing list apb...@li...<mailto:apb...@li...> https://lists.sourceforge.net/lists/listinfo/apbs-users ------------------------------------------------------------------------------ Cloud Computing - Latest Buzzword or a Glimpse of the Future? This paper surveys cloud computing today: What are the benefits? Why are businesses embracing it? What are its payoffs and pitfalls? http://www.accelacomm.com/jaw/sdnl/114/51425149/ _______________________________________________ apbs-users mailing list apb...@li...<mailto:apb...@li...> https://lists.sourceforge.net/lists/listinfo/apbs-users On Wednesday, 14 December 2011 21:20:03 UTC+5:30, Baker, Nathan wrote: Hi Francois -- The origin is the location of the lower corner: http://www.poissonboltzmann.org/file-formats/mesh-and-data-formats/opendx-scalar-data Thanks, __________________________________________________ Nathan Baker Pacific Northwest National Laboratory Tel: 509-375-3997 http://nabaker.me -----Original Message----- From: Francois Berenger [mailto:ber...@ri...<mailto:ber...@ri...>] Sent: Tuesday, December 13, 2011 11:23 PM To: apb...@li...<mailto:apb...@li...> Subject: [apbs-users] origin coordinates in a .dx file Hello, When I read a .dx file generated by APBS, is the origin located at the center of the grid or at one of its corners? Sorry for the stupid question, I read the doc about the .dx file format but the answer is not obvious to me. Regards, Francois. ------------------------------------------------------------------------------ Cloud Computing - Latest Buzzword or a Glimpse of the Future? This paper surveys cloud computing today: What are the benefits? Why are businesses embracing it? What are its payoffs and pitfalls? http://www.accelacomm.com/jaw/sdnl/114/51425149/ _______________________________________________ apbs-users mailing list apb...@li...<mailto:apb...@li...> https://lists.sourceforge.net/lists/listinfo/apbs-users ------------------------------------------------------------------------------ Cloud Computing - Latest Buzzword or a Glimpse of the Future? This paper surveys cloud computing today: What are the benefits? Why are businesses embracing it? What are its payoffs and pitfalls? http://www.accelacomm.com/jaw/sdnl/114/51425149/ _______________________________________________ apbs-users mailing list apb...@li...<mailto:apb...@li...> https://lists.sourceforge.net/lists/listinfo/apbs-users On Wednesday, 14 December 2011 21:20:03 UTC+5:30, Baker, Nathan wrote: Hi Francois -- The origin is the location of the lower corner: http://www.poissonboltzmann.org/file-formats/mesh-and-data-formats/opendx-scalar-data Thanks, __________________________________________________ Nathan Baker Pacific Northwest National Laboratory Tel: 509-375-3997 http://nabaker.me -----Original Message----- From: Francois Berenger [mailto:ber...@ri...<mailto:ber...@ri...>] Sent: Tuesday, December 13, 2011 11:23 PM To: apb...@li...<mailto:apb...@li...> Subject: [apbs-users] origin coordinates in a .dx file Hello, When I read a .dx file generated by APBS, is the origin located at the center of the grid or at one of its corners? Sorry for the stupid question, I read the doc about the .dx file format but the answer is not obvious to me. Regards, Francois. ------------------------------------------------------------------------------ Cloud Computing - Latest Buzzword or a Glimpse of the Future? This paper surveys cloud computing today: What are the benefits? Why are businesses embracing it? What are its payoffs and pitfalls? http://www.accelacomm.com/jaw/sdnl/114/51425149/ _______________________________________________ apbs-users mailing list apb...@li...<mailto:apb...@li...> https://lists.sourceforge.net/lists/listinfo/apbs-users ------------------------------------------------------------------------------ Cloud Computing - Latest Buzzword or a Glimpse of the Future? This paper surveys cloud computing today: What are the benefits? Why are businesses embracing it? What are its payoffs and pitfalls? http://www.accelacomm.com/jaw/sdnl/114/51425149/ _______________________________________________ apbs-users mailing list apb...@li...<mailto:apb...@li...> https://lists.sourceforge.net/lists/listinfo/apbs-users |