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From: <all...@us...> - 2012-02-23 16:43:46
|
Revision: 60
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=60&view=rev
Author: allysonlister
Date: 2012-02-23 16:43:40 +0000 (Thu, 23 Feb 2012)
Log Message:
-----------
Number of MIRIAM databases updated. Version of UniProt JAPI updated.
Modified Paths:
--------------
trunk/pom.xml
trunk/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
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From: <all...@us...> - 2012-01-18 09:13:28
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Revision: 59
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=59&view=rev
Author: allysonlister
Date: 2012-01-18 09:13:17 +0000 (Wed, 18 Jan 2012)
Log Message:
-----------
Number of MIRIAM databases updated.
Modified Paths:
--------------
trunk/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
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From: <all...@us...> - 2011-11-22 14:07:28
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Revision: 58
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=58&view=rev
Author: allysonlister
Date: 2011-11-22 14:07:17 +0000 (Tue, 22 Nov 2011)
Log Message:
-----------
Added a not null check to SbmlManipulator. Changed query string for PC Querier to reflect what seems to be the expected argument ("format=") even though the documentation says something else ("output="). Updated installation instructions for libsbml version. Updated libsbml to 5.2.0 and java to 1.6 and uniprot japi to 2011.11. Updated tests to reflect these changes and other changes in the source databases.
Modified Paths:
--------------
trunk/pom.xml
trunk/src/main/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulator.java
trunk/src/main/java/uk/ac/cisban/saint/querying/pathwaycommons/PathwayCommonsQuerier.java
trunk/src/site/xdoc/installation.xml
trunk/src/test/java/uk/ac/cisban/saint/querying/pathwaycommons/PathwayCommonsServiceTest.java
trunk/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
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From: <all...@us...> - 2011-06-20 10:09:57
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Revision: 57
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=57&view=rev
Author: allysonlister
Date: 2011-06-20 10:09:51 +0000 (Mon, 20 Jun 2011)
Log Message:
-----------
Added a couple more tests for the MIRIAM web service to match the new method available from there.
Modified Paths:
--------------
trunk/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
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From: <all...@us...> - 2011-06-17 18:57:34
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Revision: 56
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=56&view=rev
Author: allysonlister
Date: 2011-06-17 18:57:28 +0000 (Fri, 17 Jun 2011)
Log Message:
-----------
Updated the code based on a new version of the MIRIAM web services (1.1.2). Also added the beginning of installation instructions.
Modified Paths:
--------------
trunk/pom.xml
trunk/src/main/java/uk/ac/cisban/saint/server/MiriamServiceImpl.java
trunk/src/site/site.xml
trunk/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
Added Paths:
-----------
trunk/src/site/xdoc/
trunk/src/site/xdoc/installation.xml
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From: <all...@us...> - 2011-06-16 13:19:33
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Revision: 55
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=55&view=rev
Author: allysonlister
Date: 2011-06-16 13:19:27 +0000 (Thu, 16 Jun 2011)
Log Message:
-----------
cleaned up the code
Modified Paths:
--------------
trunk/src/test/java/uk/ac/cisban/saint/parsing/cellml/CellMLManipulatorTest.java
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From: <all...@us...> - 2011-06-16 12:28:51
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Revision: 54
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=54&view=rev
Author: allysonlister
Date: 2011-06-16 12:28:45 +0000 (Thu, 16 Jun 2011)
Log Message:
-----------
Small modifications to the style of output for STRING records. Removed some output to stdout. Cleaned some code in StringQuerier
Modified Paths:
--------------
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/InteractorRecord.java
trunk/src/main/java/uk/ac/cisban/saint/querying/string/StringQuerier.java
trunk/src/main/java/uk/ac/cisban/saint/server/MiriamServiceImpl.java
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From: <all...@us...> - 2011-06-16 12:05:09
|
Revision: 53
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=53&view=rev
Author: allysonlister
Date: 2011-06-16 12:05:03 +0000 (Thu, 16 Jun 2011)
Log Message:
-----------
All tests (except the MIRIAM WS getLocations() test) pass. Fixed minor error in the creation of the filename for the annotated model. Test for null return values for getLocations() now, as the method is behaving differently from how it used to.
Modified Paths:
--------------
trunk/pom.xml
trunk/src/main/java/uk/ac/cisban/saint/client/structure/ConstantsConverter.java
trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLManipulator.java
trunk/src/main/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulator.java
trunk/src/main/java/uk/ac/cisban/saint/server/MiriamServiceImpl.java
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/SbmlAdapter.java
trunk/src/main/resources/BIOMD0000000087.xml
trunk/src/test/java/uk/ac/cisban/saint/SbmlModelServiceImplTest.java
trunk/src/test/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulatorTest.java
trunk/src/test/java/uk/ac/cisban/saint/querying/biomart/SaintBiomartSoapClientTest.java
trunk/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
trunk/src/test/java/uk/ac/cisban/saint/querying/string/StringServiceTest.java
trunk/src/test/java/uk/ac/cisban/saint/server/ModelServiceTest.java
trunk/src/test/java/uk/ac/cisban/saint/server/SaintUniProtQueryServiceImplTest.java
trunk/src/test/resources/BIOMD0000000087.xml
Removed Paths:
-------------
trunk/src/test/java/uk/ac/cisban/saint/parsing/cellml/TestCellMLBootstrap.java
trunk/src/test/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulatorTest2.java
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From: <all...@us...> - 2011-06-15 15:29:16
|
Revision: 52
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=52&view=rev
Author: allysonlister
Date: 2011-06-15 15:29:10 +0000 (Wed, 15 Jun 2011)
Log Message:
-----------
Fixed bug that appears when the MIRIAM WS getLocations() method doesn't run as expected. Fixed bug in querying and display of Pathway Commons data. Modified tests such that they work with the updated libraries and code. Resulting changes also propogated to non-test code.
Modified Paths:
--------------
trunk/pom.xml
trunk/src/main/java/uk/ac/cisban/saint/client/AnnotationDetail.java
trunk/src/main/java/uk/ac/cisban/saint/client/Annotator.java
trunk/src/main/java/uk/ac/cisban/saint/client/MiriamService.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationManager.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/ConstantsConverter.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/SbmlAnnotGroup.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/SbmlAnnotResource.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/GoRecord.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/InteractorRecord.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/UniprotRecord.java
trunk/src/main/java/uk/ac/cisban/saint/querying/pathwaycommons/PathwayCommonsQuerier.java
trunk/src/main/java/uk/ac/cisban/saint/querying/string/StringQuerier.java
trunk/src/main/java/uk/ac/cisban/saint/querying/uniprot/UniProtQuerier.java
trunk/src/main/java/uk/ac/cisban/saint/server/MasterQueryServiceImpl.java
trunk/src/main/java/uk/ac/cisban/saint/server/MiriamServiceImpl.java
trunk/src/test/java/uk/ac/cisban/saint/querying/pathwaycommons/PathwayCommonsServiceTest.java
trunk/src/test/java/uk/ac/cisban/saint/server/SaintUniProtQueryServiceImplTest.java
Removed Paths:
-------------
trunk/src/test/java/uk/ac/cisban/saint/client/structure/ConstantsConverterTest.java
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From: <all...@us...> - 2011-06-13 20:03:07
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Revision: 51
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=51&view=rev
Author: allysonlister
Date: 2011-06-13 20:03:00 +0000 (Mon, 13 Jun 2011)
Log Message:
-----------
Updated pom location for javax.jms and updated gwt-maven-plugin version
Modified Paths:
--------------
trunk/pom.xml
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From: <all...@us...> - 2011-06-13 12:30:40
|
Revision: 50
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=50&view=rev
Author: allysonlister
Date: 2011-06-13 12:30:34 +0000 (Mon, 13 Jun 2011)
Log Message:
-----------
Minor documentation update. Also, Updated Saint code to ensure works. Also, added some comments for stdout during debug mode.
Modified Paths:
--------------
trunk/src/main/java/uk/ac/cisban/saint/client/gui/Labels.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
trunk/src/main/java/uk/ac/cisban/saint/querying/pathwaycommons/PathwayCommonsQuerier.java
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/SbmlAdapter.java
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From: <all...@us...> - 2011-06-09 15:21:08
|
Revision: 49
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=49&view=rev
Author: allysonlister
Date: 2011-06-09 15:21:02 +0000 (Thu, 09 Jun 2011)
Log Message:
-----------
Upgraded to libSBML 5, GWT 2.2.0, and cellml api 1.9. Various small fixes to allow for this change.
Modified Paths:
--------------
trunk/pom.xml
trunk/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
trunk/src/main/java/uk/ac/cisban/saint/server/MiriamServiceImpl.java
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/CellMLAdapter.java
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/SbmlAdapter.java
trunk/src/test/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulatorTest.java
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From: <sta...@us...> - 2010-05-17 11:29:50
|
Revision: 48
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=48&view=rev
Author: stahlblau
Date: 2010-05-17 11:29:44 +0000 (Mon, 17 May 2010)
Log Message:
-----------
Test for parsing cellml files
Added Paths:
-----------
trunk/src/test/java/uk/ac/cisban/saint/parsing/cellml/CellMLManipulatorTest.java
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From: <sta...@us...> - 2010-05-17 11:24:24
|
Revision: 47
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=47&view=rev
Author: stahlblau
Date: 2010-05-17 11:24:18 +0000 (Mon, 17 May 2010)
Log Message:
-----------
* More tweaking for CellML annotation and using the CVTerm class
* Removed the pesky mythical "Logger" class
Modified Paths:
--------------
trunk/saint.iws
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/SimpleRecord.java
trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLManipulator.java
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/CellMLAdapter.java
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From: <all...@us...> - 2010-05-17 11:09:46
|
Revision: 46
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=46&view=rev
Author: allysonlister
Date: 2010-05-17 11:09:40 +0000 (Mon, 17 May 2010)
Log Message:
-----------
Updated code to not use deprecated GWT features to finish the upgrade to GWT 2.0.3. Note that one deprecated handler still exists in the code, as I wasn't sure how to upgrade it. Code compiles and runs in new development mode (though my local cellml installation is giving me problems unrelated to the upgrade). Due to the problems with CellML, cannot ensure that all conversions from listeners to handlers are working properly. I need to first fix the cellml installation locally before I can get past the "upload file" stage of Saint.
Fixed a couple of unit tests, and commented out all other errors/failures while Morgan focuses on the cellml errors. Will fix all unit test failures and errors as time permits.
Modified Paths:
--------------
trunk/pom.xml
trunk/src/main/java/uk/ac/cisban/saint/client/AnnotationDetail.java
trunk/src/main/java/uk/ac/cisban/saint/client/Annotator.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AddPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatePanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationManager.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationSummaryTable.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/ContentPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/FooterPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/HeaderPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/TaxonomyPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/DetailUpdateEvent.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/EntityTypeRecord.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/InteractorSet.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/SbmlAnnotGroup.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/GeneRecord.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/GoRecord.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/InteractorRecord.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/UniprotRecord.java
trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLManipulator.java
trunk/src/main/java/uk/ac/cisban/saint/public/Annotator.css
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/CellMLAdapter.java
trunk/src/test/java/uk/ac/cisban/saint/client/structure/ConstantsConverterTest.java
trunk/src/test/java/uk/ac/cisban/saint/parsing/cellml/TestCellMLBootstrap.java
trunk/src/test/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulatorTest.java
trunk/src/test/java/uk/ac/cisban/saint/querying/pathwaycommons/PathwayCommonsServiceTest.java
trunk/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
trunk/src/test/java/uk/ac/cisban/saint/querying/string/StringServiceTest.java
trunk/src/test/java/uk/ac/cisban/saint/server/ModelServiceTest.java
trunk/src/test/java/uk/ac/cisban/saint/server/SaintUniProtQueryServiceImplTest.java
Added Paths:
-----------
trunk/src/main/java/uk/ac/cisban/saint/client/components/TooltipHandler.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatedModelTabHandler.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/
trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/DetailUpdateHandler.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/ModelLoadHandler.java
Removed Paths:
-------------
trunk/src/main/java/uk/ac/cisban/saint/client/components/TooltipListener.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatedModelTabListener.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/DetailUpdateListener.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/ModelLoadListener.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/listeners/
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From: <all...@us...> - 2010-05-14 13:51:00
|
Revision: 45
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=45&view=rev
Author: allysonlister
Date: 2010-05-14 13:50:54 +0000 (Fri, 14 May 2010)
Log Message:
-----------
Updated POM to work with GWT 2.0.3. Code compiles and runs in new development mode.
Modified Paths:
--------------
trunk/pom.xml
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From: <sta...@us...> - 2010-04-15 12:16:54
|
Revision: 44
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=44&view=rev
Author: stahlblau
Date: 2010-04-15 12:16:46 +0000 (Thu, 15 Apr 2010)
Log Message:
-----------
Saint can now put annotations into CellML files!
Modified Paths:
--------------
trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLManipulator.java
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/CellMLAdapter.java
Added Paths:
-----------
trunk/src/test/java/uk/ac/cisban/saint/parsing/cellml/
trunk/src/test/java/uk/ac/cisban/saint/parsing/cellml/TestCellMLBootstrap.java
trunk/src/test/resources/bertram_2006.cellml
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From: <sta...@us...> - 2010-04-15 12:14:12
|
Revision: 43
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=43&view=rev
Author: stahlblau
Date: 2010-04-15 12:14:04 +0000 (Thu, 15 Apr 2010)
Log Message:
-----------
Javadocs and variable renaming
Modified Paths:
--------------
trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLWriter.java
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From: <sta...@us...> - 2010-04-15 12:13:40
|
Revision: 42
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=42&view=rev
Author: stahlblau
Date: 2010-04-15 12:13:34 +0000 (Thu, 15 Apr 2010)
Log Message:
-----------
Javadocs and lazy CellMLBootstrap instantiation
Modified Paths:
--------------
trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLReader.java
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From: <sta...@us...> - 2010-04-15 12:12:47
|
Revision: 41
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=41&view=rev
Author: stahlblau
Date: 2010-04-15 12:12:41 +0000 (Thu, 15 Apr 2010)
Log Message:
-----------
Added CVTerm class and tests to handle annotation in CellML
Added Paths:
-----------
trunk/src/main/java/cellml_api/
trunk/src/main/java/cellml_api/CVTerm.java
trunk/src/test/java/cellml_api/
trunk/src/test/java/cellml_api/CVTermTest.java
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From: <sta...@us...> - 2010-04-07 11:44:41
|
Revision: 40
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=40&view=rev
Author: stahlblau
Date: 2010-04-07 11:44:35 +0000 (Wed, 07 Apr 2010)
Log Message:
-----------
Rolled the GWT version back to 1.5.3 (again).
Modified Paths:
--------------
trunk/pom.xml
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From: <sta...@us...> - 2010-03-03 13:24:53
|
Revision: 39
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=39&view=rev
Author: stahlblau
Date: 2010-03-03 13:24:47 +0000 (Wed, 03 Mar 2010)
Log Message:
-----------
May not be functional!
*CellML Integration
Modified Paths:
--------------
trunk/pom.xml
trunk/src/main/java/uk/ac/cisban/saint/client/Annotator.java
trunk/src/main/java/uk/ac/cisban/saint/client/components/TooltipListener.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatePanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/listeners/DetailUpdateEvent.java
trunk/src/main/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulator.java
trunk/src/main/java/uk/ac/cisban/saint/server/FileServlet.java
trunk/src/main/java/uk/ac/cisban/saint/server/MiriamServiceImpl.java
trunk/src/main/java/uk/ac/cisban/saint/server/SbmlModelServiceImpl.java
trunk/src/test/java/uk/ac/cisban/saint/SbmlModelServiceImplTest.java
Added Paths:
-----------
trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/
trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLManipulator.java
trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLReader.java
trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLWriter.java
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/Adapter.java
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/CellMLAdapter.java
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/SbmlAdapter.java
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From: <sta...@us...> - 2010-03-03 12:00:46
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Revision: 38
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=38&view=rev
Author: stahlblau
Date: 2010-03-03 12:00:40 +0000 (Wed, 03 Mar 2010)
Log Message:
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Added Paths:
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trunk/src/test/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulatorTest2.java
trunk/src/test/resources/BIOMD0000000064-l2v1.xml
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
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From: <sta...@us...> - 2010-03-02 17:31:10
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Revision: 37
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=37&view=rev
Author: stahlblau
Date: 2010-03-02 17:31:04 +0000 (Tue, 02 Mar 2010)
Log Message:
-----------
Added Paths:
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branches/cellml_branch/src/main/java/uk/ac/cisban/saint/parsing/cellml/
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLManipulator.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLReader.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLWriter.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
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From: <sta...@us...> - 2010-03-02 17:25:23
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Revision: 36
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=36&view=rev
Author: stahlblau
Date: 2010-03-02 17:25:08 +0000 (Tue, 02 Mar 2010)
Log Message:
-----------
Added Paths:
-----------
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/server/model_adapters/
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/server/model_adapters/Adapter.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/server/model_adapters/CellMLAdapter.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/server/model_adapters/SbmlAdapter.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
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