Scoring and Minimization with AutoDock Vina
A software package for processing and analyzing chemical trajectories
Software for molecular simulations and trajectory analysis
Time-dependent simulation of open and closed quantum systems
Constructing and optimizing general mathematical and physical models
Molecular Dynamics Cell Construction
a Toolset for Molecular Mechanical Force Field Parameterization
TrajLab subproject: Molecular dynamics simulations in MATLAB
TrajLab subproject: Metastability analysis of molecular conformations
MEMBPLUGIN: studying membrane complexity in VMD
A fast and versatile molecular dynamics program
A Fast, OpenSource Program for Docking Ligands to Proteins and N.Acids
An ensemble of models showing diauxic growth behavior
AFM puller control software
Molecular dynamics with aqueous-organic solvent mixtures
Graphic molecular dynamic package.
APL@Voro a tool for model bilayer simulation analysis.
Interpretation of Biomolecular MD simulations
Python script to automate umbrella sampling with AMBER
A particle simulation visualization program
An evolutionary simulator of transcription regulatory networks