Activity for Zechen Chong
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Zechen Chong posted a comment on discussion General Discussion
Hi Catalina, You're correct. After the div step, you should get a very strict haplotype. But I don't know if the length of the haplotype meets your need. In addition, the divided clusters may not come from the same locus since the clustering may involve similar sequences of different loci. Thanks, Zechen
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Hi Claudius, The first two are correct. The third one is strand, i.e. , forward or...
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Hi Claudius, There is a description in the README file. Will it meet your need? Thanks,...
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modified: divide.c
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modified: Makefile
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new file mergectg.h mergectg.c
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modified: mergectg.c
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just comparing reads similarity between two clu...
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merge and assemble along tree and hash all leaves
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rainbow1.1
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prepare ctgs to merge done
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rainbow 2.0.2
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modified: main.c
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new file: .gitignore
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divide using call_key_col instead of _call_key_col
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modified Makefile
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tree guided merge ctgs done! version 1.2
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modified: divide.c
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added ezmsim module
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Makefile changed
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added index_ctgs and free_index
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modified: mergectg.c
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seedup divide module
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update README.txt and rerun_rbasm.pl
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new file: .gitignore
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modified: Makefile
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new file: bloom_filter.h
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modified: divide.c
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make a few changes compatible with Ubuntu
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modified: asm_R2.c
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Merge branch 'rjdiv'
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modified: divide.c
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merged with origin
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modified: Makefile
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modified: divide.c
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modified: mergectg, memory pool was used
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modified: mergectg.c
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modified: README.txt
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add select_all_rbcontig.pl to fetch all contigs...
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Hi Alex, Thanks for pointing this out. I have fixed this. You can install rainbow...
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