Activity for David Yarmosh

  • David Yarmosh David Yarmosh posted a comment on discussion General Discussion

    I found plenty of H37Rv in the config file, but I'm not sure which value t use to download with the java -jar snpEff.jar download function. I also tried using the default example so i could get a feel for it, but something didn't work. $ java -jar snpEff.jar download GRCh38.76 java.lang.RuntimeException: Property: 'GRCh38.76.genome' not found at org.snpeff.interval.Genome.<init>(Genome.java:106) at org.snpeff.snpEffect.Config.readGenomeConfig(Config.java:680) at org.snpeff.snpEffect.Config.readConfig(Config.java:648)...

  • David Yarmosh David Yarmosh posted a comment on discussion General Discussion

    I was directed to SnpEff by this paper http://genomea.asm.org/content/4/4/e00657-16.full?sid=2d31c990-13c8-4941-8a5b-93f88acc8009#ref-6 which indicates they used SnpEff to annotate the H37Rv Mtb genome. I can't find this in the list of databases here on sourceforge. Am I not seeing it or is it labeled differently? The above paper does not indicate how they did so. Thanks, Dave

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