Yao-Chung Chen

Hello Dr. Ye, Thank you for your suggestion. I download the bed file from UCSC table browser which you provided. However, as I re-run the idenfigyDistal3UTR, I recieve this message in my terminal: UTR identification [| ] 1% doneModification of non-creatable array value attempted, subscript -18459924 at script/identifyDistal3UTR.pl line 424. The first four rows of the hg38 annotation bed file I download chr1 201283451 201332993 NM_000299 0 + 201283702 201328836 0 15 453,104,395,145,208,178,63,115,156,177,154,187,85,107,2920,...

Hello Dr. Ye, Thank you for your suggestion. I download the bed file from UCSC table browser which you provided. However, as I re-run the idenfigyDistal3UTR, I recieve this message in my terminal: UTR identification [| ] 1% doneModification of non-creatable array value attempted, subscript -18459924 at script/identifyDistal3UTR.pl line 424. The first four rows of the hg38 annotation bed file I download chr1 201283451 201332993 NM_000299 0 + 201283702 201328836 0 15 453,104,395,145,208,178,63,115,156,177,154,187,85,107,2920,...

Hello Dr. Ye, Thank you for your suggestion. I download the bed file from UCSC table browser which you provided. However, as I re-run the idenfigyDistal3UTR, I recieve this message in my terminal: UTR identification [| ] 1% doneModification of non-creatable array value attempted, subscript -18459924 at script/identifyDistal3UTR.pl line 424. The annotation bed file I download chr1 201283451 201332993 NM_000299 0 + 201283702 201328836 0 15 453,104,395,145,208,178,63,115,156,177,154,187,85,107,2920,...

Hello Dr. Ye, I have installed apatrap to analyze 3'utr in human caner cell line (control vs. treatment), and I run identifyDistal3UTR and predictAPA by writing a bash script and run it using tmux. However, I cannot generated utr.bed file from using identifyDistal3UTR. Therefore, after using predictAPA, it generates an empty file. Can you help me or give me some ideas? Thank you. Yao-Chung Treatment bedgraph (base) urameshi@avis:~/projects/3utr/HFN53$ head -n 5 HFN53_treatment.bedgraph chr4 165341916...